Atomistry » Sodium » PDB 4n01-4nji » 4n9s
Atomistry »
  Sodium »
    PDB 4n01-4nji »
      4n9s »

Sodium in PDB 4n9s: High Resolution X-Ray Structure of Urate Oxidase in Complex with 8- Hydroxyxanthine

Enzymatic activity of High Resolution X-Ray Structure of Urate Oxidase in Complex with 8- Hydroxyxanthine

All present enzymatic activity of High Resolution X-Ray Structure of Urate Oxidase in Complex with 8- Hydroxyxanthine:
1.7.3.3;

Protein crystallography data

The structure of High Resolution X-Ray Structure of Urate Oxidase in Complex with 8- Hydroxyxanthine, PDB code: 4n9s was solved by E.Oksanen, M.P.Blakeley, M.Budayova-Spano, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.27 / 1.06
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 79.930, 95.370, 104.810, 90.00, 90.00, 90.00
R / Rfree (%) 12.6 / 14.1

Other elements in 4n9s:

The structure of High Resolution X-Ray Structure of Urate Oxidase in Complex with 8- Hydroxyxanthine also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the High Resolution X-Ray Structure of Urate Oxidase in Complex with 8- Hydroxyxanthine (pdb code 4n9s). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the High Resolution X-Ray Structure of Urate Oxidase in Complex with 8- Hydroxyxanthine, PDB code: 4n9s:

Sodium binding site 1 out of 1 in 4n9s

Go back to Sodium Binding Sites List in 4n9s
Sodium binding site 1 out of 1 in the High Resolution X-Ray Structure of Urate Oxidase in Complex with 8- Hydroxyxanthine


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of High Resolution X-Ray Structure of Urate Oxidase in Complex with 8- Hydroxyxanthine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na402

b:13.4
occ:1.00
 O A:ILE94 2.3 11.9 1.0
O A:ILE88 2.4 14.3 1.0
O A:HOH594 2.5 18.7 1.0
O A:TYR91 2.5 13.4 1.0
OE1 A:GLU136 2.6 17.0 0.8
O A:ASN92 2.9 18.9 1.0
HA A:ASN92 3.2 18.2 1.0
HA A:ILE88 3.2 13.4 1.0
C A:ASN92 3.4 15.7 1.0
C A:ILE88 3.4 11.9 1.0
DD1 A:HIS95 3.4 22.5 1.0
CD A:GLU136 3.5 19.9 0.8
C A:ILE94 3.5 11.1 1.0
D A:ILE94 3.5 13.8 1.0
C A:TYR91 3.5 12.7 1.0
HB A:ILE88 3.6 14.8 1.0
CA A:ASN92 3.7 15.2 1.0
CA A:ILE88 3.8 11.2 1.0
OE2 A:GLU136 3.8 23.9 0.6
HA A:HIS95 3.8 13.6 1.0
N A:ILE94 3.9 11.5 1.0
ND1 A:HIS95 4.0 18.8 1.0
O A:HOH815 4.0 34.5 1.0
N A:ASN92 4.0 14.6 1.0
HB A:ILE94 4.0 12.8 1.0
O A:HOH695 4.1 30.2 1.0
CB A:ILE88 4.2 12.3 1.0
CA A:ILE94 4.2 10.5 1.0
N A:HIS93 4.3 12.7 1.0
HE1 A:HIS95 4.3 22.3 1.0
O A:HOH702 4.4 27.1 1.0
D A:TYR91 4.4 14.3 1.0
N A:HIS95 4.5 11.0 1.0
CE1 A:HIS95 4.5 18.6 1.0
HB2 A:GLU136 4.5 20.8 1.0
N A:GLU89 4.6 12.9 1.0
HA A:GLU89 4.6 16.0 1.0
CA A:HIS95 4.6 11.3 1.0
HG22 A:ILE88 4.6 16.3 1.0
CB A:ILE94 4.7 10.7 1.0
C A:HIS93 4.7 12.0 1.0
CG A:GLU136 4.7 18.4 1.0
O A:PHE87 4.7 12.5 1.0
CA A:TYR91 4.7 12.5 1.0
D A:HIS93 4.8 15.2 1.0
HB2 A:TYR91 4.8 15.2 1.0
N A:TYR91 4.8 11.9 1.0
D A:ASN92 4.9 17.5 1.0
HG3 A:GLU136 4.9 22.1 1.0
CA A:HIS93 4.9 12.4 1.0
HG22 A:ILE94 4.9 14.3 1.0
CA A:GLU89 5.0 13.3 1.0

Reference:

E.Oksanen, M.P.Blakeley, M.El-Hajji, U.Ryde, M.Budayova-Spano. The Neutron Structure of Urate Oxidase Resolves A Long-Standing Mechanistic Conundrum and Reveals Unexpected Changes in Protonation. Plos One V. 9 86651 2014.
ISSN: ESSN 1932-6203
PubMed: 24466188
DOI: 10.1371/JOURNAL.PONE.0086651
Page generated: Mon Oct 7 17:09:48 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy