Sodium in PDB 4n6h: 1.8 A Structure of the Human Delta Opioid 7TM Receptor (Psi Community Target)

The structure of 1.8 A Structure of the Human Delta Opioid 7TM Receptor (Psi Community Target), PDB code: 4n6h was solved by G.Fenalti, P.M.Giguere, V.Katritch, X.-P.Huang, A.A.Thompson, G.W.Han, V.Cherezov, B.L.Roth, R.C.Stevens, Gpcr Network (Gpcr), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.70 / 1.80
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	86.230, 72.851, 84.408, 90.00, 107.48, 90.00
R / Rfree (%)	17.2 / 19

The binding sites of Sodium atom in the 1.8 A Structure of the Human Delta Opioid 7TM Receptor (Psi Community Target) (pdb code 4n6h). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the 1.8 A Structure of the Human Delta Opioid 7TM Receptor (Psi Community Target), PDB code: 4n6h:

Sodium binding site 1 out of 1 in the 1.8 A Structure of the Human Delta Opioid 7TM Receptor (Psi Community Target)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of 1.8 A Structure of the Human Delta Opioid 7TM Receptor (Psi Community Target) within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1220 b:26.6 occ:1.00 OD1 A:ASP95 2.2 27.1 1.0 O A:HOH1307 2.3 27.7 1.0 OG A:SER135 2.4 22.4 1.0 OD1 A:ASN131 2.4 23.0 1.0 O A:HOH1308 2.5 37.2 1.0 CG A:ASP95 3.3 25.9 1.0 CG A:ASN131 3.4 22.4 1.0 CB A:SER135 3.4 22.5 1.0 OD2 A:ASP95 3.8 30.2 1.0 ND2 A:ASN131 3.8 23.2 1.0 O A:HOH1337 3.9 27.2 1.0 OG A:SER311 4.2 28.5 1.0 O A:ASN131 4.2 22.8 1.0 N A:ASP95 4.4 22.1 1.0 CB A:ASP95 4.5 23.1 1.0 CA A:ASP95 4.5 21.8 1.0 OD1 A:ASN310 4.5 26.8 1.0 CB A:ALA94 4.5 23.2 1.0 O A:LEU91 4.6 22.2 1.0 CA A:SER135 4.6 20.7 1.0 CB A:ASN131 4.8 23.2 1.0 O A:HOH1310 4.8 40.5 1.0 C A:ALA94 4.8 21.5 1.0 CE1 A:PHE270 4.9 31.8 1.0 C A:ASN131 4.9 21.7 1.0 CZ2 A:TRP274 4.9 25.8 1.0

G.Fenalti, P.M.Giguere, V.Katritch, X.P.Huang, A.A.Thompson, V.Cherezov, B.L.Roth, R.C.Stevens. Molecular Control of Delta-Opioid Receptor Signalling. Nature V. 506 191 2014.
ISSN: ISSN 0028-0836
PubMed: 24413399
DOI: 10.1038/NATURE12944