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Sodium in PDB 4n3v: Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.89 A Resolution with Product Added

Enzymatic activity of Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.89 A Resolution with Product Added

All present enzymatic activity of Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.89 A Resolution with Product Added:
4.2.1.106;

Protein crystallography data

The structure of Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.89 A Resolution with Product Added, PDB code: 4n3v was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.41 / 1.89
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 84.282, 84.282, 311.823, 90.00, 90.00, 120.00
R / Rfree (%) 18.8 / 21.8

Other elements in 4n3v:

The structure of Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.89 A Resolution with Product Added also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.89 A Resolution with Product Added (pdb code 4n3v). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.89 A Resolution with Product Added, PDB code: 4n3v:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 4n3v

Go back to Sodium Binding Sites List in 4n3v
Sodium binding site 1 out of 2 in the Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.89 A Resolution with Product Added


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.89 A Resolution with Product Added within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na202

b:26.3
occ:0.33
 OE1 A:GLU105 2.4 26.5 1.0
O A:HOH317 2.5 31.7 1.0
CD A:GLU105 3.2 31.2 1.0
OE2 A:GLU105 3.4 34.4 1.0
O A:HOH301 3.9 20.0 1.0
CG A:GLU105 4.6 26.7 1.0
OD1 A:ASN107 4.7 39.9 0.5
CE A:MET84 4.8 24.1 1.0
ZN A:ZN201 4.8 19.9 0.3

Sodium binding site 2 out of 2 in 4n3v

Go back to Sodium Binding Sites List in 4n3v
Sodium binding site 2 out of 2 in the Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.89 A Resolution with Product Added


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.89 A Resolution with Product Added within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na202

b:23.9
occ:0.33
 OE1 B:GLU105 2.5 23.8 1.0
O B:HOH323 2.5 29.1 1.0
CD B:GLU105 3.2 28.3 1.0
OE2 B:GLU105 3.3 26.4 1.0
O B:HOH301 3.9 18.1 1.0
CG B:GLU105 4.6 22.6 1.0
OD1 B:ASN107 4.7 34.6 0.5
CE B:MET84 4.8 20.8 1.0
ZN B:ZN201 4.8 17.9 0.3

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Mon Oct 7 17:08:41 2024

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