Sodium in PDB 4n3v: Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.89 A Resolution with Product Added

Enzymatic activity of Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.89 A Resolution with Product Added

All present enzymatic activity of Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.89 A Resolution with Product Added:
4.2.1.106;

Protein crystallography data

The structure of Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.89 A Resolution with Product Added, PDB code: 4n3v was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	47.41 / 1.89
*Space group*	H 3 2
*Cell size a, b, c (Å), α, β, γ (°)*	84.282, 84.282, 311.823, 90.00, 90.00, 120.00
*R / R_free (%)*	18.8 / 21.8

Other elements in 4n3v:

The structure of Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.89 A Resolution with Product Added also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.89 A Resolution with Product Added (pdb code 4n3v). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.89 A Resolution with Product Added, PDB code: 4n3v:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 4n3v

Go back to

Sodium Binding Sites List in 4n3v

Sodium binding site 1 out of 2 in the Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.89 A Resolution with Product Added

Mono view

Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.89 A Resolution with Product Added within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Na202 b:26.3 occ:0.33	OE1	A:GLU105	2.4	26.5	1.0
	O	A:HOH317	2.5	31.7	1.0
	CD	A:GLU105	3.2	31.2	1.0
	OE2	A:GLU105	3.4	34.4	1.0
	O	A:HOH301	3.9	20.0	1.0
	CG	A:GLU105	4.6	26.7	1.0
	OD1	A:ASN107	4.7	39.9	0.5
	CE	A:MET84	4.8	24.1	1.0
	ZN	A:ZN201	4.8	19.9	0.3

Sodium binding site 2 out of 2 in 4n3v

Go back to

Sodium Binding Sites List in 4n3v

Sodium binding site 2 out of 2 in the Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.89 A Resolution with Product Added

Mono view

Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.89 A Resolution with Product Added within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
B:Na202 b:23.9 occ:0.33	OE1	B:GLU105	2.5	23.8	1.0
	O	B:HOH323	2.5	29.1	1.0
	CD	B:GLU105	3.2	28.3	1.0
	OE2	B:GLU105	3.3	26.4	1.0
	O	B:HOH301	3.9	18.1	1.0
	CG	B:GLU105	4.6	22.6	1.0
	OD1	B:ASN107	4.7	34.6	0.5
	CE	B:MET84	4.8	20.8	1.0
	ZN	B:ZN201	4.8	17.9	0.3

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.

Page generated: Mon Oct 7 17:08:41 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF

	© Copyright 2008-2020 by atomistry.com
Home \| Site Map \| Copyright \| Contact us \| Privacy