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Sodium in PDB 4n0j: Crystal Structure of Dimethyllysine Hen Egg-White Lysozyme in Complex with SCLX4 at 1.9 A Resolution

Enzymatic activity of Crystal Structure of Dimethyllysine Hen Egg-White Lysozyme in Complex with SCLX4 at 1.9 A Resolution

All present enzymatic activity of Crystal Structure of Dimethyllysine Hen Egg-White Lysozyme in Complex with SCLX4 at 1.9 A Resolution:
3.2.1.17;

Protein crystallography data

The structure of Crystal Structure of Dimethyllysine Hen Egg-White Lysozyme in Complex with SCLX4 at 1.9 A Resolution, PDB code: 4n0j was solved by R.E.Mcgovern, P.B.Crowley, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.20 / 1.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 45.850, 30.200, 94.210, 90.00, 96.31, 90.00
R / Rfree (%) 16.8 / 21

Other elements in 4n0j:

The structure of Crystal Structure of Dimethyllysine Hen Egg-White Lysozyme in Complex with SCLX4 at 1.9 A Resolution also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Chlorine (Cl) 3 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Dimethyllysine Hen Egg-White Lysozyme in Complex with SCLX4 at 1.9 A Resolution (pdb code 4n0j). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Dimethyllysine Hen Egg-White Lysozyme in Complex with SCLX4 at 1.9 A Resolution, PDB code: 4n0j:

Sodium binding site 1 out of 1 in 4n0j

Go back to Sodium Binding Sites List in 4n0j
Sodium binding site 1 out of 1 in the Crystal Structure of Dimethyllysine Hen Egg-White Lysozyme in Complex with SCLX4 at 1.9 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Dimethyllysine Hen Egg-White Lysozyme in Complex with SCLX4 at 1.9 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na207

b:16.9
occ:1.00
 OG A:SER72 2.3 17.4 1.0
O A:CYS64 2.4 12.0 1.0
O A:SER60 2.4 10.8 1.0
O A:HOH338 2.4 24.5 1.0
O A:ARG73 2.5 17.8 1.0
O A:HOH308 2.5 17.7 1.0
CB A:SER72 3.2 17.6 1.0
C A:CYS64 3.4 12.0 1.0
C A:SER60 3.5 11.1 1.0
C A:ARG73 3.5 17.4 1.0
CA A:ASN65 3.8 13.4 1.0
N A:ARG73 3.9 17.9 1.0
N A:ASN65 4.0 12.6 1.0
C A:SER72 4.0 17.9 1.0
CA A:SER60 4.1 10.9 1.0
CA A:SER72 4.3 17.8 1.0
CA A:ARG73 4.3 17.9 1.0
N A:ASN74 4.4 16.2 1.0
CB A:SER60 4.4 10.6 1.0
OD1 A:ASN65 4.4 15.7 1.0
N A:CYS64 4.5 11.1 1.0
O A:SER72 4.5 17.4 1.0
CA A:ASN74 4.5 15.0 1.0
CB A:ASN74 4.5 14.9 1.0
CB A:ASN65 4.6 14.5 1.0
N A:ARG61 4.6 11.6 1.0
CA A:CYS64 4.6 11.3 1.0
O A:ARG61 4.6 13.3 1.0
C A:ARG61 4.6 12.5 1.0
N A:ASP66 4.6 12.6 1.0
O A:HOH320 4.7 13.3 1.0
CB A:THR69 4.7 13.7 1.0
C A:ASN65 4.8 12.8 1.0
CA A:ARG61 4.8 12.5 1.0
O A:HOH339 4.8 37.8 1.0
O A:THR69 4.9 13.9 1.0
CG A:ASN65 5.0 15.8 1.0

Reference:

R.E.Mcgovern, B.D.Snarr, J.A.Lyons, J.Mcfarlane, A.L.Whiting, I.Paci, F.Hof, P.B.Crowley. Structural Study of A Small Molecule Receptor Bound to Dimethyllysine in Lysozyme Chem.Sci. 2015.
DOI: 10.1039/C4SC02383H
Page generated: Mon Oct 7 17:08:41 2024

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