Sodium in PDB 4j9x: Crystal Structure of the Complex of A Hydroxyproline Epimerase (Target Efi-506499, Pseudomonas Fluorescens Pf-5) with Trans-4-Hydroxy-L- Proline

The structure of Crystal Structure of the Complex of A Hydroxyproline Epimerase (Target Efi-506499, Pseudomonas Fluorescens Pf-5) with Trans-4-Hydroxy-L- Proline, PDB code: 4j9x was solved by M.W.Vetting, R.Toro, R.Bhosle, N.F.Al Obaidi, L.L.Morisco, S.R.Wasserman, S.Sojitra, E.Washington, A.Scott Glenn, S.Chowdhury, B.Evans, J.Hammonds, M.Stead, B.Hillerich, J.Love, R.D.Seidel, H.J.Imker, J.A.Gerlt, S.C.Almo, Enzyme Function Initiative (Efi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.76 / 1.70
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	74.755, 90.097, 103.913, 90.00, 90.00, 90.00
R / Rfree (%)	19.4 / 22.5

The binding sites of Sodium atom in the Crystal Structure of the Complex of A Hydroxyproline Epimerase (Target Efi-506499, Pseudomonas Fluorescens Pf-5) with Trans-4-Hydroxy-L- Proline (pdb code 4j9x). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of the Complex of A Hydroxyproline Epimerase (Target Efi-506499, Pseudomonas Fluorescens Pf-5) with Trans-4-Hydroxy-L- Proline, PDB code: 4j9x:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of the Complex of A Hydroxyproline Epimerase (Target Efi-506499, Pseudomonas Fluorescens Pf-5) with Trans-4-Hydroxy-L- Proline


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Complex of A Hydroxyproline Epimerase (Target Efi-506499, Pseudomonas Fluorescens Pf-5) with Trans-4-Hydroxy-L- Proline within 5.0Å range: probe atom residue distance (Å) B Occ A:Na402 b:27.0 occ:1.00 O A:ASP215 2.2 31.4 1.0 O A:HOH825 2.3 36.2 1.0 O A:ALA218 2.4 22.1 1.0 O A:HOH826 2.4 38.2 1.0 O A:HOH581 2.5 29.8 1.0 O A:HOH777 2.5 39.1 1.0 C A:ASP215 3.4 26.1 1.0 C A:ALA218 3.5 20.3 1.0 O A:HOH730 3.8 49.5 1.0 O A:HOH758 3.8 40.0 1.0 N A:ASP215 4.1 30.5 1.0 O A:HOH740 4.2 40.5 1.0 N A:ALA218 4.2 26.1 1.0 CA A:ASP219 4.2 28.5 1.0 C A:PRO216 4.3 29.7 1.0 CA A:ASP215 4.3 29.1 1.0 N A:ASP219 4.3 19.4 1.0 O A:ASP219 4.3 25.5 1.0 CA A:PRO216 4.3 34.9 1.0 N A:PRO216 4.4 33.2 1.0 C A:ASP219 4.4 21.4 1.0 CA A:ALA218 4.5 20.7 1.0 N A:GLN217 4.6 29.2 1.0 O A:PRO216 4.6 35.3 1.0 CB A:ASP215 4.8 27.6 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of the Complex of A Hydroxyproline Epimerase (Target Efi-506499, Pseudomonas Fluorescens Pf-5) with Trans-4-Hydroxy-L- Proline


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of the Complex of A Hydroxyproline Epimerase (Target Efi-506499, Pseudomonas Fluorescens Pf-5) with Trans-4-Hydroxy-L- Proline within 5.0Å range: probe atom residue distance (Å) B Occ B:Na402 b:30.9 occ:1.00 O B:ASP215 2.3 25.6 1.0 O B:HOH713 2.3 38.6 1.0 O B:ALA218 2.3 21.4 1.0 O B:HOH699 2.4 34.8 1.0 O B:HOH565 2.5 24.7 1.0 O B:HOH690 2.5 40.1 1.0 C B:ASP215 3.4 23.7 1.0 C B:ALA218 3.5 18.6 1.0 O B:HOH779 4.0 53.1 1.0 N B:ASP215 4.0 28.4 1.0 N B:ALA218 4.2 26.7 1.0 CA B:ASP219 4.2 19.6 1.0 CA B:ASP215 4.3 24.4 1.0 C B:PRO216 4.3 27.6 1.0 N B:ASP219 4.3 18.7 1.0 O B:ASP219 4.4 20.6 1.0 N B:PRO216 4.4 29.7 1.0 CA B:PRO216 4.4 26.3 1.0 C B:ASP219 4.4 18.8 1.0 CA B:ALA218 4.5 24.6 1.0 O B:PRO216 4.5 31.4 1.0 O B:HOH758 4.6 36.5 1.0 N B:GLN217 4.7 25.7 1.0 CB B:ASP215 4.8 22.3 1.0

M.W.Vetting, R.Toro, R.Bhosle, N.F.Al Obaidi, L.L.Morisco, S.R.Wasserman, S.Sojitra, E.Washington, A.Scott Glenn, S.Chowdhury, B.Evans, J.Hammonds, M.Stead, B.Hillerich, J.Love, R.D.Seidel, H.J.Imker, J.A.Gerlt, S.C.Almo, Enzyme Function Initiative (Efi). Crystal Structure of the Complex of A Hydroxyproline Epimerase (Target Efi-506499, Pseudomonas Fluorescens Pf-5) with Trans-4-Hydroxy-L-Proline To Be Published.