Sodium in PDB 4j2h: Crystal Structure of A Putative Short-Chain Alcohol Dehydrogenase From Sinorhizobium Meliloti 1021 (Target Nysgrc-011708)

The structure of Crystal Structure of A Putative Short-Chain Alcohol Dehydrogenase From Sinorhizobium Meliloti 1021 (Target Nysgrc-011708), PDB code: 4j2h was solved by P.Sampathkumar, A.Gizzi, M.Ahmed, N.Banu, R.Bhosle, J.Bonanno, S.Chamala, S.Chowdhury, A.Fiser, A.S.Glenn, J.Hammonds, B.Hillerich, K.Khafizov, J.Lafleur, J.D.Love, M.Stead, R.Seidel, R.Toro, S.C.Almo, New Yorkstructural Genomics Research Consortium (Nysgrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.26 / 2.10
Space group	P 64 2 2
Cell size a, b, c (Å), α, β, γ (°)	103.875, 103.875, 101.165, 90.00, 90.00, 120.00
R / Rfree (%)	18.9 / 21.5

The binding sites of Sodium atom in the Crystal Structure of A Putative Short-Chain Alcohol Dehydrogenase From Sinorhizobium Meliloti 1021 (Target Nysgrc-011708) (pdb code 4j2h). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A Putative Short-Chain Alcohol Dehydrogenase From Sinorhizobium Meliloti 1021 (Target Nysgrc-011708), PDB code: 4j2h:

Sodium binding site 1 out of 1 in the Crystal Structure of A Putative Short-Chain Alcohol Dehydrogenase From Sinorhizobium Meliloti 1021 (Target Nysgrc-011708)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Putative Short-Chain Alcohol Dehydrogenase From Sinorhizobium Meliloti 1021 (Target Nysgrc-011708) within 5.0Å range: probe atom residue distance (Å) B Occ A:Na306 b:46.6 occ:1.00 O A:SER254 2.1 40.5 1.0 O A:TYR251 2.2 39.7 1.0 O A:HOH429 2.5 44.1 1.0 O A:HOH430 2.7 43.2 1.0 C A:SER254 3.3 41.3 1.0 C A:TYR251 3.5 41.4 1.0 N A:SER254 3.9 41.6 1.0 CA A:SER254 3.9 40.8 1.0 CE1 A:TYR251 4.0 48.8 1.0 O A:LEU252 4.0 41.1 1.0 CD1 A:TYR251 4.0 48.4 1.0 O A:ILE255 4.1 46.6 1.0 CB A:SER254 4.1 42.4 1.0 C A:LEU252 4.1 40.2 1.0 CA A:LEU252 4.1 40.3 1.0 CZ A:TYR251 4.2 48.2 1.0 C A:ILE255 4.2 47.8 1.0 N A:LEU252 4.3 40.4 1.0 CG A:TYR251 4.3 44.5 1.0 N A:ILE255 4.3 43.4 1.0 CE2 A:TYR251 4.4 46.2 1.0 CA A:TYR251 4.5 42.6 1.0 CD2 A:TYR251 4.5 46.2 1.0 OXT A:ILE255 4.6 48.6 1.0 CA A:ILE255 4.6 45.9 1.0 OG A:SER254 4.7 44.2 1.0 O A:LYS213 4.7 47.5 1.0 OH A:TYR251 4.7 49.7 1.0 N A:ALA253 4.8 39.6 1.0 C A:ALA253 4.8 41.2 1.0

P.Sampathkumar, A.Gizzi, M.Ahmed, N.Banu, R.Bhosle, J.Bonanno, S.Chamala, S.Chowdhury, A.Fiser, A.S.Glenn, J.Hammonds, B.Hillerich, K.Khafizov, J.Lafleur, J.D.Love, M.Stead, R.Seidel, R.Toro, S.C.Almo, New York Structural Genomics Research Consortium (Nysgrc). Crystal Structure of A Putative Short-Chain Alcohol Dehydrogenase From Sinorhizobium Meliloti 1021 (Target Nysgrc-011708) To Be Published.