Atomistry » Sodium » PDB 4iic-4j0n » 4irw
Atomistry »
  Sodium »
    PDB 4iic-4j0n »
      4irw »

Sodium in PDB 4irw: Co-Crystallization of Streptavidin-Biotin Complex with A Lanthanide- Ligand Complex Gives Rise to A Novel Crystal Form

Protein crystallography data

The structure of Co-Crystallization of Streptavidin-Biotin Complex with A Lanthanide- Ligand Complex Gives Rise to A Novel Crystal Form, PDB code: 4irw was solved by R.A.M.S.S.Bandara, D.Q.Liu, A.Hindupur, K.F.Tesh, R.O.Fox, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.86 / 1.40
Space group C 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 64.423, 71.395, 55.494, 90.00, 90.00, 90.00
R / Rfree (%) 12.3 / 15.4

Other elements in 4irw:

The structure of Co-Crystallization of Streptavidin-Biotin Complex with A Lanthanide- Ligand Complex Gives Rise to A Novel Crystal Form also contains other interesting chemical elements:

Terbium (Tb) 5 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Co-Crystallization of Streptavidin-Biotin Complex with A Lanthanide- Ligand Complex Gives Rise to A Novel Crystal Form (pdb code 4irw). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Co-Crystallization of Streptavidin-Biotin Complex with A Lanthanide- Ligand Complex Gives Rise to A Novel Crystal Form, PDB code: 4irw:

Sodium binding site 1 out of 1 in 4irw

Go back to Sodium Binding Sites List in 4irw
Sodium binding site 1 out of 1 in the Co-Crystallization of Streptavidin-Biotin Complex with A Lanthanide- Ligand Complex Gives Rise to A Novel Crystal Form


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Co-Crystallization of Streptavidin-Biotin Complex with A Lanthanide- Ligand Complex Gives Rise to A Novel Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na219

b:23.1
occ:0.50
HA2 A:GLY48 2.7 21.6 1.0
OG1 A:THR66 2.7 18.1 1.0
O A:THR47 2.7 15.1 0.3
O A:THR47 2.7 20.4 0.7
H A:THR66 3.0 19.1 1.0
HA A:TRP65 3.1 18.7 1.0
HB A:THR66 3.2 20.5 1.0
N A:THR66 3.3 15.9 1.0
HG1 A:THR66 3.3 21.7 1.0
CB A:THR66 3.4 17.1 1.0
HG23 A:THR47 3.5 37.8 0.7
CA A:GLY48 3.6 18.0 1.0
C A:THR47 3.6 18.3 1.0
C A:TRP65 3.8 15.7 1.0
HA3 A:GLY48 3.8 21.6 1.0
CA A:TRP65 3.8 15.6 1.0
CA A:THR66 4.0 16.4 1.0
N A:GLY48 4.0 18.3 1.0
OG1 A:THR47 4.1 14.0 0.3
CG2 A:THR47 4.5 31.5 0.7
HG1 A:THR47 4.5 16.8 0.3
HA A:THR66 4.6 19.6 1.0
O A:TRP65 4.6 16.1 1.0
HB2 A:TRP65 4.7 18.8 1.0
N A:TRP65 4.7 15.5 1.0
H A:THR47 4.7 23.1 0.7
H A:THR47 4.7 20.7 0.3
C A:GLY48 4.7 17.2 1.0
HG22 A:THR47 4.7 37.8 0.7
CG2 A:THR66 4.8 16.6 1.0
H A:GLY48 4.8 22.0 1.0
O A:GLY64 4.8 16.4 1.0
CA A:THR47 4.9 18.8 1.0
HG21 A:THR66 4.9 19.9 1.0
CB A:TRP65 4.9 15.7 1.0
H A:ARG49 4.9 20.6 1.0
HG22 A:THR81 5.0 22.7 1.0
HG21 A:THR47 5.0 37.8 0.7
O A:THR66 5.0 17.1 1.0

Reference:

R.A.M.S.S.Bandara, D.Q.Liu, A.Hindupur, K.F.Tesh, R.O.Fox. Co-Crystallization of Streptavidin-Biotin Complex with A Lanthanide-Ligand Complex Gives Rise to A Novel Crystal Form To Be Published.
Page generated: Mon Oct 7 16:06:16 2024

Last articles

Cl in 5T6H
Cl in 5T6E
Cl in 5T5T
Cl in 5T6C
Cl in 5T6A
Cl in 5T67
Cl in 5T5X
Cl in 5T5P
Cl in 5T4S
Cl in 5T55
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy