Sodium in PDB 4ii8: Lysozyme with Benzyl Alcohol

All present enzymatic activity of Lysozyme with Benzyl Alcohol:
3.2.1.17;

The structure of Lysozyme with Benzyl Alcohol, PDB code: 4ii8 was solved by P.Sharma, Ashish, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.97 / 1.88
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	78.198, 78.198, 37.174, 90.00, 90.00, 90.00
R / Rfree (%)	18.3 / 22.5

The structure of Lysozyme with Benzyl Alcohol also contains other interesting chemical elements:

Chlorine

(Cl)

6 atoms

The binding sites of Sodium atom in the Lysozyme with Benzyl Alcohol (pdb code 4ii8). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Lysozyme with Benzyl Alcohol, PDB code: 4ii8:

Sodium binding site 1 out of 1 in the Lysozyme with Benzyl Alcohol


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Lysozyme with Benzyl Alcohol within 5.0Å range: probe atom residue distance (Å) B Occ A:Na207 b:24.0 occ:1.00 O A:HOH306 3.2 20.2 1.0 N A:THR69 3.3 21.8 1.0 O A:THR69 3.4 26.5 1.0 N A:ARG68 3.5 21.7 1.0 C A:GLY67 3.6 28.3 1.0 OD1 A:ASN65 3.7 26.7 1.0 CA A:GLY67 3.7 24.8 1.0 N A:GLY67 3.7 21.7 1.0 OG A:SER72 3.7 32.1 1.0 C A:THR69 3.7 26.6 1.0 CA A:THR69 3.9 23.9 1.0 O A:HOH324 4.0 25.2 1.0 CB A:THR69 4.2 23.1 1.0 C A:ARG68 4.2 23.8 1.0 O A:GLY67 4.3 26.1 1.0 CA A:ARG68 4.3 24.3 1.0 OD1 A:ASP66 4.4 21.2 1.0 O A:HOH302 4.6 21.0 1.0 N A:PRO70 4.6 29.0 1.0 OG1 A:THR69 4.8 21.7 1.0 C A:ASP66 4.8 21.0 1.0 CG A:ASN65 4.9 22.7 1.0 CL A:CL206 4.9 44.7 0.5 N A:ASP66 4.9 22.5 1.0 O2 A:GOL208 4.9 37.2 1.0

P.Sharma, Ashish. Crystal Structure of Lysozyme with Benzyl Alcohol To Be Published.