Sodium in PDB 4ied: Crystal Structure of Fus-1 (Oxa-85), A Class D Beta-Lactamase From Fusobacterium Nucleatum Subsp. Polymorphum

Enzymatic activity of Crystal Structure of Fus-1 (Oxa-85), A Class D Beta-Lactamase From Fusobacterium Nucleatum Subsp. Polymorphum

All present enzymatic activity of Crystal Structure of Fus-1 (Oxa-85), A Class D Beta-Lactamase From Fusobacterium Nucleatum Subsp. Polymorphum:
3.5.2.6;

Protein crystallography data

The structure of Crystal Structure of Fus-1 (Oxa-85), A Class D Beta-Lactamase From Fusobacterium Nucleatum Subsp. Polymorphum, PDB code: 4ied was solved by S.Mangani, M.Benvenuti, J.D.Docquier, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	37.59 / 1.50
*Space group*	P 1
*Cell size a, b, c (Å), α, β, γ (°)*	43.945, 65.670, 91.698, 84.59, 82.91, 70.12
*R / R_free (%)*	14.6 / 18.4

Other elements in 4ied:

The structure of Crystal Structure of Fus-1 (Oxa-85), A Class D Beta-Lactamase From Fusobacterium Nucleatum Subsp. Polymorphum also contains other interesting chemical elements:

Magnesium	(Mg)	12 atoms
Chlorine	(Cl)	1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Fus-1 (Oxa-85), A Class D Beta-Lactamase From Fusobacterium Nucleatum Subsp. Polymorphum (pdb code 4ied). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Fus-1 (Oxa-85), A Class D Beta-Lactamase From Fusobacterium Nucleatum Subsp. Polymorphum, PDB code: 4ied:

Sodium binding site 1 out of 1 in 4ied

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Sodium Binding Sites List in 4ied

Sodium binding site 1 out of 1 in the Crystal Structure of Fus-1 (Oxa-85), A Class D Beta-Lactamase From Fusobacterium Nucleatum Subsp. Polymorphum

Mono view

Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Fus-1 (Oxa-85), A Class D Beta-Lactamase From Fusobacterium Nucleatum Subsp. Polymorphum within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
B:Na301 b:16.8 occ:1.00	O	B:HOH477	2.7	16.3	1.0
	O	B:ILE72	2.7	9.3	1.0
	O	B:HOH625	3.2	20.6	1.0
	CD1	B:PHE80	3.5	6.8	1.0
	O	B:HOH472	3.7	12.7	1.0
	OE1	B:GLU78	3.8	17.3	1.0
	CE1	B:PHE80	3.8	6.8	1.0
	O	B:HOH597	3.8	21.5	1.0
	O	B:HOH554	3.8	20.0	1.0
	C	B:ILE72	3.8	8.8	1.0
	CG1	B:VAL73	3.8	9.2	1.0
	CA	B:VAL73	4.4	9.2	1.0
	N	B:VAL73	4.5	8.8	1.0
	O	B:HOH781	4.5	34.5	1.0
	OE2	B:GLU117	4.5	9.6	1.0
	CG2	B:ILE72	4.6	8.3	1.0
	CB	B:VAL73	4.7	8.8	1.0
	CG	B:PHE80	4.8	6.4	1.0
	CD	B:GLU78	4.9	11.4	1.0
	O	B:HOH570	4.9	15.1	1.0
	CA	B:ILE72	5.0	8.7	1.0

Reference:

S.Mangani, M.Benvenuti, J.D.Docquier. Crystal Structure of Fus-1 (Oxa-85), A Class D Beta-Lactamase From Fusobacterium Nucleatum Subsp. Polymorphum To Be Published.

Page generated: Mon Oct 7 15:59:11 2024

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