Sodium in PDB 4ia5: Hydratase From Lactobacillus Acidophilus - Semet Derivative (Apo Lah)

The structure of Hydratase From Lactobacillus Acidophilus - Semet Derivative (Apo Lah), PDB code: 4ia5 was solved by S.Khoshnevis, P.Neumann, R.Ficner, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.79 / 2.22
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	168.750, 78.970, 108.770, 90.00, 90.00, 90.00
R / Rfree (%)	21.4 / 25.9

The structure of Hydratase From Lactobacillus Acidophilus - Semet Derivative (Apo Lah) also contains other interesting chemical elements:

Potassium

(K)

2 atoms

The binding sites of Sodium atom in the Hydratase From Lactobacillus Acidophilus - Semet Derivative (Apo Lah) (pdb code 4ia5). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Hydratase From Lactobacillus Acidophilus - Semet Derivative (Apo Lah), PDB code: 4ia5:

Sodium binding site 1 out of 1 in the Hydratase From Lactobacillus Acidophilus - Semet Derivative (Apo Lah)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Hydratase From Lactobacillus Acidophilus - Semet Derivative (Apo Lah) within 5.0Å range: probe atom residue distance (Å) B Occ B:Na601 b:58.2 occ:1.00 OE1 B:GLU110 2.4 65.7 1.0 N B:LEU100 2.6 70.9 1.0 OG B:SER99 2.8 62.6 1.0 O B:HOH899 2.8 50.9 1.0 N B:GLU101 3.1 63.1 1.0 CD B:GLU110 3.4 60.0 1.0 CA B:LEU100 3.5 71.9 1.0 CG B:GLU101 3.5 65.5 1.0 C B:SER99 3.6 68.9 1.0 CA B:SER99 3.6 62.9 1.0 CB B:SER99 3.6 59.6 1.0 CB B:LEU100 3.7 68.7 1.0 C B:LEU100 3.8 78.8 1.0 OE2 B:GLU110 3.8 57.9 1.0 CB B:GLU101 3.9 64.6 1.0 CD1 B:TYR107 4.0 63.7 1.0 CG B:PRO231 4.0 61.9 1.0 CA B:GLU101 4.1 70.4 1.0 CE1 B:TYR107 4.3 65.2 1.0 CG B:GLU110 4.6 50.0 1.0 O B:SER99 4.7 64.4 1.0 N B:VAL102 4.8 66.3 1.0 CD B:GLU101 4.8 68.5 1.0 CB B:PRO231 4.8 64.9 1.0 CG B:LEU100 4.9 75.0 1.0 O B:HOH812 4.9 47.2 1.0 CB B:GLU110 4.9 49.0 1.0 O B:LEU100 5.0 86.3 1.0 CD1 B:LEU100 5.0 78.4 1.0

A.Volkov, S.Khoshnevis, P.Neumann, C.Herrfurth, D.Wohlwend, R.Ficner, I.Feussner. Crystal Structure Analysis of A Fatty Acid Double-Bond Hydratase From Lactobacillus Acidophilus Acta Crystallogr.,Sect.D V. 69 648 2013.
ISSN: ISSN 0907-4449
PubMed: 23519674
DOI: 10.1107/S0907444913000991