Sodium in PDB 4i8q: Structure of the Aminoaldehyde Dehydrogenase 1 E260A Mutant From Solanum Lycopersicum (SLAMADH1-E260A)

The structure of Structure of the Aminoaldehyde Dehydrogenase 1 E260A Mutant From Solanum Lycopersicum (SLAMADH1-E260A), PDB code: 4i8q was solved by S.Morera, A.Vigouroux, D.Kopecny, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.77 / 2.65
Space group	I 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	98.040, 118.070, 128.210, 90.00, 90.00, 90.00
R / Rfree (%)	20.9 / 28.2

The binding sites of Sodium atom in the Structure of the Aminoaldehyde Dehydrogenase 1 E260A Mutant From Solanum Lycopersicum (SLAMADH1-E260A) (pdb code 4i8q). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of the Aminoaldehyde Dehydrogenase 1 E260A Mutant From Solanum Lycopersicum (SLAMADH1-E260A), PDB code: 4i8q:

Sodium binding site 1 out of 1 in the Structure of the Aminoaldehyde Dehydrogenase 1 E260A Mutant From Solanum Lycopersicum (SLAMADH1-E260A)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of the Aminoaldehyde Dehydrogenase 1 E260A Mutant From Solanum Lycopersicum (SLAMADH1-E260A) within 5.0Å range: probe atom residue distance (Å) B Occ A:Na612 b:55.7 occ:1.00 O A:LEU189 2.3 37.5 1.0 C A:LEU189 3.2 36.2 1.0 O A:ILE31 3.3 43.7 1.0 O A:HOH738 3.4 39.2 1.0 O A:ASP99 3.5 42.0 1.0 N A:ILE31 3.7 34.5 1.0 CA A:LEU189 3.7 29.5 1.0 OD1 A:ASP99 3.7 43.3 1.0 C A:ILE31 4.2 42.1 1.0 O A:HOH737 4.3 29.1 1.0 CA A:ILE31 4.3 35.0 1.0 N A:ALA190 4.4 34.2 1.0 CB A:LEU189 4.4 28.6 1.0 O A:HOH778 4.5 48.0 1.0 CG2 A:ILE30 4.5 36.6 1.0 CA A:ILE30 4.6 33.8 1.0 C A:ASP99 4.6 40.9 1.0 C A:ILE30 4.6 36.0 1.0 CB A:ILE31 4.6 37.3 1.0 O A:GLU188 4.7 37.7 1.0 CG A:ASP99 4.8 45.3 1.0 N A:LEU189 4.9 30.8 1.0 CA A:ALA190 4.9 34.5 1.0 O A:VAL338 5.0 40.3 1.0

D.Kopecny, R.Koncitikova, M.Tylichova, A.Vigouroux, H.Moskalikova, M.Soural, M.Sebela, S.Morera. Plant ALDH10 Family: Identifying Critical Residues For Substrate Specificity and Trapping A Thiohemiacetal Intermediate. J.Biol.Chem. V. 288 9491 2013.
ISSN: ISSN 0021-9258
PubMed: 23408433
DOI: 10.1074/JBC.M112.443952