Sodium in PDB 4i26: 2.20 Angstroms X-Ray Crystal Structure of 2-Aminomuconate 6- Semialdehyde Dehydrogenase From Pseudomonas Fluorescens

The structure of 2.20 Angstroms X-Ray Crystal Structure of 2-Aminomuconate 6- Semialdehyde Dehydrogenase From Pseudomonas Fluorescens, PDB code: 4i26 was solved by I.Davis, L.Huo, L.Chen, A.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	31.72 / 2.20
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	88.266, 141.894, 172.917, 90.00, 90.00, 90.00
R / Rfree (%)	18.6 / 23.9

The binding sites of Sodium atom in the 2.20 Angstroms X-Ray Crystal Structure of 2-Aminomuconate 6- Semialdehyde Dehydrogenase From Pseudomonas Fluorescens (pdb code 4i26). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 3 binding sites of Sodium where determined in the 2.20 Angstroms X-Ray Crystal Structure of 2-Aminomuconate 6- Semialdehyde Dehydrogenase From Pseudomonas Fluorescens, PDB code: 4i26:
Jump to Sodium binding site number: 1; 2; 3;

Sodium binding site 1 out of 3 in the 2.20 Angstroms X-Ray Crystal Structure of 2-Aminomuconate 6- Semialdehyde Dehydrogenase From Pseudomonas Fluorescens


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of 2.20 Angstroms X-Ray Crystal Structure of 2-Aminomuconate 6- Semialdehyde Dehydrogenase From Pseudomonas Fluorescens within 5.0Å range: probe atom residue distance (Å) B Occ B:Na603 b:37.8 occ:1.00 O B:SER491 2.2 32.9 1.0 O B:HOH835 2.4 37.9 1.0 O B:ASP488 2.4 35.1 1.0 O B:HOH766 2.5 38.2 1.0 O B:HOH749 2.5 38.6 1.0 C B:SER491 3.4 35.7 1.0 C B:ASP488 3.6 38.3 1.0 O B:PHE489 3.8 37.1 1.0 C B:PHE489 4.0 35.0 1.0 CA B:PHE489 4.1 35.0 1.0 N B:SER491 4.1 37.8 1.0 CG1 B:ILE493 4.2 41.8 1.0 CD1 B:LEU159 4.2 32.3 1.0 N B:ILE493 4.2 35.0 1.0 CA B:SER491 4.3 33.2 1.0 N B:ASP492 4.3 33.8 1.0 N B:PHE489 4.3 33.7 1.0 CA B:ASP492 4.4 28.3 1.0 CA B:ASP488 4.6 33.5 1.0 C B:ASP492 4.6 32.6 1.0 CB B:SER491 4.8 35.0 1.0 N B:TYR490 4.9 31.3 1.0 CD1 B:ILE493 4.9 41.7 1.0 OE1 B:GLU264 5.0 47.5 1.0

Sodium binding site 2 out of 3 in the 2.20 Angstroms X-Ray Crystal Structure of 2-Aminomuconate 6- Semialdehyde Dehydrogenase From Pseudomonas Fluorescens


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of 2.20 Angstroms X-Ray Crystal Structure of 2-Aminomuconate 6- Semialdehyde Dehydrogenase From Pseudomonas Fluorescens within 5.0Å range: probe atom residue distance (Å) B Occ C:Na602 b:33.6 occ:1.00 O C:SER491 2.1 32.1 1.0 O C:HOH729 2.3 35.9 1.0 O C:HOH841 2.4 34.6 1.0 O C:ASP488 2.4 32.6 1.0 O C:HOH728 2.5 37.8 1.0 C C:SER491 3.3 33.0 1.0 C C:ASP488 3.6 31.8 1.0 O C:HOH757 3.6 44.3 1.0 O C:PHE489 3.7 33.2 1.0 C C:PHE489 4.1 35.3 1.0 CA C:PHE489 4.1 32.7 1.0 N C:SER491 4.1 35.0 1.0 N C:ILE493 4.2 34.6 1.0 N C:ASP492 4.2 33.7 1.0 CD1 C:LEU159 4.2 36.3 1.0 CG1 C:ILE493 4.3 38.0 1.0 CA C:SER491 4.3 34.9 1.0 CA C:ASP492 4.3 36.7 1.0 N C:PHE489 4.4 28.7 1.0 O C:HOH723 4.4 35.2 1.0 C C:ASP492 4.6 32.1 1.0 CA C:ASP488 4.6 33.5 1.0 OE2 C:GLU264 4.9 42.6 1.0 CB C:SER491 4.9 37.4 1.0 CD1 C:ILE493 4.9 41.9 1.0 N C:TYR490 5.0 34.0 1.0

Sodium binding site 3 out of 3 in the 2.20 Angstroms X-Ray Crystal Structure of 2-Aminomuconate 6- Semialdehyde Dehydrogenase From Pseudomonas Fluorescens


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of 2.20 Angstroms X-Ray Crystal Structure of 2-Aminomuconate 6- Semialdehyde Dehydrogenase From Pseudomonas Fluorescens within 5.0Å range: probe atom residue distance (Å) B Occ D:Na602 b:34.5 occ:1.00 O D:SER491 2.1 28.1 1.0 O D:HOH861 2.2 38.5 1.0 O D:ASP488 2.3 29.9 1.0 O D:HOH853 2.4 37.2 1.0 O D:HOH839 2.5 40.1 1.0 C D:SER491 3.4 37.2 1.0 O D:HOH824 3.4 46.9 1.0 C D:ASP488 3.5 36.0 1.0 O D:PHE489 3.7 36.5 1.0 C D:PHE489 4.0 34.9 1.0 CG1 D:ILE493 4.0 41.4 1.0 CA D:PHE489 4.0 33.2 1.0 N D:SER491 4.1 33.2 1.0 CA D:SER491 4.2 30.3 1.0 N D:PHE489 4.2 25.8 1.0 N D:ASP492 4.3 32.9 1.0 N D:ILE493 4.3 34.7 1.0 CA D:ASP492 4.4 36.6 1.0 CA D:ASP488 4.5 36.2 1.0 CD1 D:LEU159 4.5 35.4 1.0 O D:HOH852 4.5 38.2 1.0 C D:ASP492 4.7 34.1 1.0 CB D:SER491 4.8 33.8 1.0 CD1 D:ILE493 4.8 41.4 1.0 N D:TYR490 4.8 33.9 1.0 OE2 D:GLU264 4.9 42.2 1.0

I.Davis, L.Huo, L.Chen, A.Liu. 2.20 Angstroms X-Ray Crystal Structure of 2-Aminomuconate 6-Semialdehyde Dehydrogenase From Pseudomonas Fluorescens To Be Published.