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Sodium in PDB 4g0a: Crystallographic Analysis of Rotavirus NSP2-Rna Complex Reveals Specific Recognition of 5'-Gg Sequence For Rtpase Activity

Protein crystallography data

The structure of Crystallographic Analysis of Rotavirus NSP2-Rna Complex Reveals Specific Recognition of 5'-Gg Sequence For Rtpase Activity, PDB code: 4g0a was solved by L.Hu, B.V.V.Prasad, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.52 / 2.10
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 107.690, 107.690, 272.211, 90.00, 90.00, 120.00
R / Rfree (%) 17.4 / 20.5

Other elements in 4g0a:

The structure of Crystallographic Analysis of Rotavirus NSP2-Rna Complex Reveals Specific Recognition of 5'-Gg Sequence For Rtpase Activity also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystallographic Analysis of Rotavirus NSP2-Rna Complex Reveals Specific Recognition of 5'-Gg Sequence For Rtpase Activity (pdb code 4g0a). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystallographic Analysis of Rotavirus NSP2-Rna Complex Reveals Specific Recognition of 5'-Gg Sequence For Rtpase Activity, PDB code: 4g0a:

Sodium binding site 1 out of 1 in 4g0a

Go back to Sodium Binding Sites List in 4g0a
Sodium binding site 1 out of 1 in the Crystallographic Analysis of Rotavirus NSP2-Rna Complex Reveals Specific Recognition of 5'-Gg Sequence For Rtpase Activity


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystallographic Analysis of Rotavirus NSP2-Rna Complex Reveals Specific Recognition of 5'-Gg Sequence For Rtpase Activity within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Na402

b:26.4
occ:1.00
O C:HOH613 2.7 22.4 1.0
O C:ASP39 3.1 15.0 1.0
O C:LYS42 3.1 12.2 1.0
CD C:PRO55 3.5 13.0 1.0
CG C:PRO55 3.7 16.7 1.0
O C:PHE43 3.7 23.1 1.0
C C:LYS42 3.7 18.8 1.0
CB C:TYR44 3.8 5.8 1.0
CA C:TYR44 3.9 12.2 1.0
CD1 C:TYR44 3.9 14.1 1.0
C C:PHE43 3.9 19.6 1.0
CB C:LYS42 4.1 23.6 1.0
N C:TYR44 4.1 15.7 1.0
C C:ASP39 4.1 18.4 1.0
CG1 C:VAL35 4.2 19.4 1.0
CB C:ASP39 4.3 25.0 1.0
CA C:LYS42 4.3 19.5 1.0
CG C:TYR44 4.4 12.9 1.0
O C:HOH686 4.4 39.5 1.0
N C:LYS42 4.5 19.3 1.0
O C:HOH552 4.5 17.8 1.0
N C:PHE43 4.5 15.0 1.0
O C:HOH649 4.7 28.8 1.0
CA C:PHE43 4.8 19.1 1.0
CA C:ASP39 4.8 23.5 1.0
CG2 C:VAL35 4.8 17.4 1.0
N C:PRO55 5.0 12.1 1.0

Reference:

L.Hu, D.C.Chow, J.T.Patton, T.Palzkill, M.K.Estes, B.V.Prasad. Crystallographic Analysis of Rotavirus NSP2-Rna Complex Reveals Specific Recognition of 5' Gg Sequence For Rtpase Activity. J.Virol. V. 86 10547 2012.
ISSN: ISSN 0022-538X
PubMed: 22811529
DOI: 10.1128/JVI.01201-12
Page generated: Tue Dec 15 06:41:15 2020

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