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Sodium in PDB 4fx5: Von Willebrand Factor Type A From Catenulispora Acidiphila

Protein crystallography data

The structure of Von Willebrand Factor Type A From Catenulispora Acidiphila, PDB code: 4fx5 was solved by E.V.Filippova, G.Minasov, L.Shuvalova, O.Kiryukhina, R.Jedrzejczak, A.Joachimiak, W.F.Anderson, Midwest Center For Structural Genomics(Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.73
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 49.673, 62.631, 142.546, 90.00, 90.00, 90.00
R / Rfree (%) 16.8 / 21.9

Sodium Binding Sites:

The binding sites of Sodium atom in the Von Willebrand Factor Type A From Catenulispora Acidiphila (pdb code 4fx5). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Von Willebrand Factor Type A From Catenulispora Acidiphila, PDB code: 4fx5:

Sodium binding site 1 out of 1 in 4fx5

Go back to Sodium Binding Sites List in 4fx5
Sodium binding site 1 out of 1 in the Von Willebrand Factor Type A From Catenulispora Acidiphila


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Von Willebrand Factor Type A From Catenulispora Acidiphila within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na501

b:24.9
occ:1.00
OG A:SER65 2.2 14.7 1.0
O A:HOH627 2.3 15.5 1.0
OG A:SER63 2.3 14.4 1.0
OD1 A:ASP164 2.4 15.4 1.0
O A:HOH831 2.4 21.9 1.0
CG A:ASP164 3.4 11.6 1.0
CB A:SER63 3.5 14.8 1.0
CB A:SER65 3.5 14.6 1.0
O A:HOH768 3.6 22.9 1.0
OD2 A:ASP164 3.7 15.0 1.0
O A:HOH708 3.8 20.8 1.0
O A:HOH610 3.9 26.7 1.0
OG1 A:THR136 3.9 16.9 1.0
OD2 A:ASP61 3.9 13.8 1.0
OD1 A:ASP61 4.1 13.7 1.0
CA A:GLY165 4.2 12.9 1.0
N A:GLY165 4.2 11.9 1.0
N A:SER65 4.2 14.3 1.0
O A:HOH829 4.4 27.4 1.0
CA A:SER65 4.4 14.7 1.0
C A:ASP164 4.4 11.8 1.0
CG A:ASP61 4.4 12.4 1.0
O A:HOH742 4.5 24.0 1.0
O A:ASP164 4.6 13.2 1.0
CA A:SER63 4.7 14.4 1.0
CB A:ASP164 4.8 12.4 1.0
C A:SER63 4.8 14.7 1.0
N A:MSE66 4.8 13.5 1.0
C A:SER65 4.8 13.6 1.0
CA A:ASP164 5.0 11.7 1.0

Reference:

E.V.Filippova, G.Minasov, L.Shuvalova, O.Kiryukhina, R.Jedrzejczak, A.Joachimiak, W.F.Anderson, Midwest Center For Structural Genomics (Mcsg). Von Willebrand Factor Type A From Catenulispora Acidiphila To Be Published.
Page generated: Tue Dec 15 06:41:07 2020

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