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Sodium in PDB 4efc: Crystal Structure of Adenylosuccinate Lyase From Trypanosoma Brucei, TB427TMP.160.5560

Enzymatic activity of Crystal Structure of Adenylosuccinate Lyase From Trypanosoma Brucei, TB427TMP.160.5560

All present enzymatic activity of Crystal Structure of Adenylosuccinate Lyase From Trypanosoma Brucei, TB427TMP.160.5560:
4.3.2.2;

Protein crystallography data

The structure of Crystal Structure of Adenylosuccinate Lyase From Trypanosoma Brucei, TB427TMP.160.5560, PDB code: 4efc was solved by A.K.Wernimont, P.Loppnau, K.T.Osman, C.H.Arrowsmith, A.M.Edwards, C.Bountra, D.A.Robinson, P.G.Wyatt, I.H.Gilbert, A.H.Fairlamb, R.Hui, Y.H.Lin, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.00 / 2.00
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 107.768, 140.744, 60.403, 90.00, 90.00, 90.00
R / Rfree (%) 14.9 / 19.1

Other elements in 4efc:

The structure of Crystal Structure of Adenylosuccinate Lyase From Trypanosoma Brucei, TB427TMP.160.5560 also contains other interesting chemical elements:

Magnesium (Mg) 3 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Adenylosuccinate Lyase From Trypanosoma Brucei, TB427TMP.160.5560 (pdb code 4efc). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Adenylosuccinate Lyase From Trypanosoma Brucei, TB427TMP.160.5560, PDB code: 4efc:

Sodium binding site 1 out of 1 in 4efc

Go back to Sodium Binding Sites List in 4efc
Sodium binding site 1 out of 1 in the Crystal Structure of Adenylosuccinate Lyase From Trypanosoma Brucei, TB427TMP.160.5560


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Adenylosuccinate Lyase From Trypanosoma Brucei, TB427TMP.160.5560 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na504

b:32.9
occ:1.00
 OD1 B:ASN337 2.2 16.4 1.0
O B:HOH664 2.5 17.3 1.0
O B:HOH661 2.6 19.9 1.0
OD1 B:ASP274 2.7 10.2 1.0
CG B:ASN337 3.5 14.1 1.0
CG B:ASP274 3.6 9.7 1.0
CA B:ASP274 3.9 8.7 1.0
O B:HOH890 4.0 15.5 1.0
CB B:ASP274 4.1 8.2 1.0
CB B:ALA277 4.2 9.4 1.0
O B:HOH901 4.3 12.9 1.0
ND2 B:ASN337 4.3 15.2 1.0
CA B:ASN337 4.4 11.2 1.0
CB B:ASN337 4.4 11.6 1.0
O B:HOH900 4.5 10.4 1.0
OD2 B:ASP274 4.6 10.1 1.0
O B:HOH639 4.7 12.3 1.0
O B:ASP274 4.7 7.9 1.0
N B:ASP274 4.7 8.8 1.0
C B:ASP274 4.9 8.7 1.0
N B:ASN337 5.0 11.2 1.0

Reference:

A.K.Wernimont, P.Loppnau, K.T.Osman, C.H.Arrowsmith, A.M.Edwards, C.Bountra, D.A.Robinson, P.G.Wyatt, I.H.Gilbert, R.Hui, Y.H.Lin. Crystal Structure of Adenylosuccinate Lyase From Trypanosoma Brucei, TB427TMP.160.5560 To Be Published.
Page generated: Mon Oct 7 15:09:15 2024

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