Sodium in PDB 4eek: Crystal Structure of Had Family Hydrolase DR_1622 From Deinococcus Radiodurans R1 (Target Efi-501256) with Bound Phosphate and Sodium

The structure of Crystal Structure of Had Family Hydrolase DR_1622 From Deinococcus Radiodurans R1 (Target Efi-501256) with Bound Phosphate and Sodium, PDB code: 4eek was solved by Y.Patskovsky, R.Toro, R.Bhosle, B.Hillerich, R.D.Seidel, E.Washington, A.Scott Glenn, S.Chowdhury, B.Evans, J.Hammonds, W.D.Zencheck, H.J.Imker, J.A.Gerlt, K.N.Allen, D.Dunaway-Mariano, S.C.Almo, Enzyme Functioninitiative (Efi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.10 / 1.60
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	55.537, 55.537, 273.094, 90.00, 90.00, 120.00
R / Rfree (%)	18.7 / 22.5

The binding sites of Sodium atom in the Crystal Structure of Had Family Hydrolase DR_1622 From Deinococcus Radiodurans R1 (Target Efi-501256) with Bound Phosphate and Sodium (pdb code 4eek). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Had Family Hydrolase DR_1622 From Deinococcus Radiodurans R1 (Target Efi-501256) with Bound Phosphate and Sodium, PDB code: 4eek:

Sodium binding site 1 out of 1 in the Crystal Structure of Had Family Hydrolase DR_1622 From Deinococcus Radiodurans R1 (Target Efi-501256) with Bound Phosphate and Sodium


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Had Family Hydrolase DR_1622 From Deinococcus Radiodurans R1 (Target Efi-501256) with Bound Phosphate and Sodium within 5.0Å range: probe atom residue distance (Å) B Occ A:Na302 b:19.9 occ:1.00 OD1 A:ASP171 2.3 18.3 1.0 O A:ASP14 2.3 18.9 1.0 OD2 A:ASP12 2.4 20.6 1.0 O A:HOH402 2.4 23.0 1.0 O A:HOH403 2.4 18.3 1.0 O4 A:PO4301 2.5 20.1 1.0 CG A:ASP12 3.2 20.0 1.0 CG A:ASP171 3.3 18.5 1.0 OD1 A:ASP12 3.3 18.5 1.0 C A:ASP14 3.5 19.0 1.0 OD2 A:ASP171 3.7 20.6 1.0 P A:PO4301 4.0 19.0 1.0 OE1 A:GLU170 4.1 17.5 1.0 CB A:ASP14 4.2 18.7 1.0 CA A:ASP14 4.2 17.7 1.0 O A:HOH401 4.2 26.6 1.0 O A:HOH529 4.3 28.5 1.0 N A:ASP14 4.4 18.6 1.0 O A:HOH404 4.4 22.0 1.0 OG A:SER172 4.4 18.9 1.0 CB A:ASP171 4.5 19.4 1.0 O A:HOH405 4.5 34.9 1.0 N A:GLY15 4.6 20.0 1.0 N A:ASP171 4.6 16.9 1.0 CB A:ASP12 4.6 18.8 1.0 CB A:SER172 4.6 20.2 1.0 O3 A:PO4301 4.7 22.3 1.0 O2 A:PO4301 4.7 21.0 1.0 CD A:PRO197 4.8 19.4 1.0 CA A:GLY15 4.8 20.3 1.0 O1 A:PO4301 4.8 18.0 1.0 N A:SER172 4.9 17.3 1.0 CA A:ASP171 4.9 16.9 1.0 C A:ASP171 4.9 16.6 1.0 CG A:PRO197 4.9 18.1 1.0

Y.Patskovsky, R.Toro, R.Bhosle, B.Hillerich, R.D.Seidel, E.Washington, A.Scott Glenn, S.Chowdhury, B.Evans, J.Hammonds, W.D.Zencheck, H.J.Imker, K.N.Allen, D.Dunaway-Mariano, J.A.Gerlt, S.C.Almo. Crystal Structure of Had Hydrolase DR_1622 Deinococcus Radiodurans R1 (Target Efi-501256) To Be Published.