Sodium in PDB 4edi: Disulfide Bonded Eutl From Clostridium Perfringens

The structure of Disulfide Bonded Eutl From Clostridium Perfringens, PDB code: 4edi was solved by M.C.Thompson, D.Cascio, C.S.Crowley, J.S.Kopstein, T.O.Yeates, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	59.59 / 2.00
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	86.747, 86.747, 251.681, 90.00, 90.00, 90.00
R / Rfree (%)	17 / 19.3

The binding sites of Sodium atom in the Disulfide Bonded Eutl From Clostridium Perfringens (pdb code 4edi). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Disulfide Bonded Eutl From Clostridium Perfringens, PDB code: 4edi:

Sodium binding site 1 out of 1 in the Disulfide Bonded Eutl From Clostridium Perfringens


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Disulfide Bonded Eutl From Clostridium Perfringens within 5.0Å range: probe atom residue distance (Å) B Occ A:Na301 b:25.4 occ:1.00 OD1 B:ASN74 2.4 23.6 1.0 OD1 A:ASN74 2.5 25.7 1.0 OD1 C:ASN74 2.5 23.9 1.0 CG B:ASN74 3.5 22.6 1.0 CG A:ASN74 3.6 25.2 1.0 CG C:ASN74 3.6 24.1 1.0 O A:HOH492 3.8 53.4 1.0 HA B:ASN74 3.8 27.2 1.0 HA C:ASN74 3.9 26.3 1.0 HA A:ASN74 3.9 27.2 1.0 O B:HOH373 4.0 45.9 1.0 HB3 C:ASN74 4.1 27.9 1.0 HB3 B:ASN74 4.2 26.8 1.0 HB3 A:ASN74 4.2 27.2 1.0 CB C:ASN74 4.3 23.2 1.0 CB B:ASN74 4.3 22.3 1.0 CB A:ASN74 4.4 22.7 1.0 HD22 B:ASN74 4.4 26.0 1.0 HD22 A:ASN74 4.5 31.1 1.0 ND2 B:ASN74 4.5 21.6 1.0 ND2 A:ASN74 4.5 25.9 1.0 CA B:ASN74 4.6 22.6 1.0 ND2 C:ASN74 4.6 22.5 1.0 CA C:ASN74 4.6 21.9 1.0 HD22 C:ASN74 4.6 26.9 1.0 CA A:ASN74 4.6 22.7 1.0

M.C.Thompson, D.Cascio, D.J.Leibly, T.O.Yeates. An Allosteric Model For Control of Pore Opening By Substrate Binding in the Eutl Microcompartment Shell Protein. Protein Sci. V. 24 956 2015.
ISSN: ISSN 0961-8368
PubMed: 25752492
DOI: 10.1002/PRO.2672