Sodium in the structure of Crystal Structure of A Leucine-Rich Repeat Protein (BT_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At 2.80 A Resolution (pdb 4ecn)

The binding sites of Sodium atom in the structure of Crystal Structure of A Leucine-Rich Repeat Protein (BT_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At 2.80 A Resolution (pdb code 4ecn). This binding sites where shown with 5.0 Angstroms radius around Sodium atom. The 4ecn structure was solved by JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG), with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 47.9-2.8 Space group P212121 a (A) 85.399 b (A) 105.463 c (A) 161.196 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 18.2 Rfree (%) 23.2 Sodium Binding Sites: Sodium binding site 1 out of 1 in 4ecn Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 4ecn. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Asp341, A: Gln342, A: Pro343, A: Gly344, A: Val345, A: Asp346, A: Hoh1131, conact list: Atom Atom Distance (A) Na C A:Asp341 4.94 Na OD1 A:Asp341 4.82 Na O A:Gln342 2.71 Na N A:Gln342 4.08 Na C A:Gln342 3.64 Na CA A:Gln342 4.49 Na N A:Pro343 4.42 Na C A:Pro343 4.89 Na CA A:Pro343 4.44 Na N A:Gly344 4.47 Na O A:Val345 2.64 Na N A:Val345 4.22 Na CB A:Val345 4.98 Na C A:Val345 3.82 Na CA A:Val345 4.53 Na N A:Asp346 4.88 Na O A:Hoh1131 3.49 interactive model: