Sodium in PDB 4eae: The Crystal Structure of A Functionally Unknown Protein From Listeria Monocytogenes Egd-E

The structure of The Crystal Structure of A Functionally Unknown Protein From Listeria Monocytogenes Egd-E, PDB code: 4eae was solved by K.Tan, M.Zhou, K.Kwon, W.F.Anderson, A.Joachimiak, Center For Structuralgenomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	22.59 / 1.32
Space group	P 61
Cell size a, b, c (Å), α, β, γ (°)	87.964, 87.964, 94.631, 90.00, 90.00, 120.00
R / Rfree (%)	15.8 / 17.7

The binding sites of Sodium atom in the The Crystal Structure of A Functionally Unknown Protein From Listeria Monocytogenes Egd-E (pdb code 4eae). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the The Crystal Structure of A Functionally Unknown Protein From Listeria Monocytogenes Egd-E, PDB code: 4eae:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the The Crystal Structure of A Functionally Unknown Protein From Listeria Monocytogenes Egd-E


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Crystal Structure of A Functionally Unknown Protein From Listeria Monocytogenes Egd-E within 5.0Å range: probe atom residue distance (Å) B Occ A:Na302 b:10.9 occ:1.00 OE1 A:GLN257 2.3 11.0 1.0 O A:ASP255 2.4 11.4 1.0 O B:HOH439 2.4 13.8 1.0 O A:LEU200 2.5 10.4 1.0 O A:GLY201 2.6 11.2 1.0 O B:HOH415 2.7 12.4 1.0 C A:GLY201 3.2 10.2 1.0 C A:LEU200 3.3 10.8 1.0 CD A:GLN257 3.4 11.4 1.0 C A:ASP255 3.5 10.9 1.0 CA A:GLY201 3.6 10.1 1.0 O A:HOH407 3.7 11.7 1.0 N A:GLY201 3.7 10.0 1.0 NE2 A:GLN257 3.9 13.2 1.0 N A:ALA202 4.1 11.0 1.0 N A:GLN257 4.1 9.1 1.0 CG A:ASP255 4.2 16.6 1.0 CB A:ASP255 4.2 13.7 1.0 OD1 A:ASP255 4.2 15.6 1.0 CB A:LEU200 4.3 10.5 1.0 O B:HOH424 4.3 12.2 1.0 N A:SER256 4.3 10.5 1.0 OE1 B:GLN257 4.4 12.4 1.0 CA A:LEU200 4.4 9.8 1.0 CA A:SER256 4.5 10.2 1.0 CA A:ASP255 4.5 13.3 1.0 CA A:ALA202 4.5 10.9 1.0 CG A:GLN257 4.5 11.2 1.0 C A:SER256 4.6 9.9 1.0 CB A:GLN257 4.6 9.5 1.0 OD2 A:ASP255 4.6 27.2 1.0 O A:HOH538 4.8 25.2 1.0 CA A:GLN257 4.9 9.0 1.0

Sodium binding site 2 out of 2 in the The Crystal Structure of A Functionally Unknown Protein From Listeria Monocytogenes Egd-E


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of The Crystal Structure of A Functionally Unknown Protein From Listeria Monocytogenes Egd-E within 5.0Å range: probe atom residue distance (Å) B Occ B:Na302 b:10.8 occ:1.00 O B:GLY201 2.4 10.2 1.0 O B:HOH421 2.4 11.6 1.0 O B:HOH424 2.5 12.2 1.0 O A:HOH407 2.5 11.7 1.0 O B:HOH413 2.5 12.0 1.0 O B:HOH432 2.7 11.9 1.0 C B:GLY201 3.3 9.7 1.0 O B:HOH417 3.3 9.1 1.0 CA B:ALA202 4.0 9.8 1.0 N B:ALA202 4.0 9.5 1.0 OE1 A:GLN257 4.0 11.0 1.0 CG1 A:VAL280 4.3 12.1 1.0 CA B:GLY201 4.3 10.5 1.0 O B:ALA202 4.4 11.4 1.0 OE1 B:GLN257 4.4 12.4 1.0 O B:LEU200 4.4 9.8 1.0 C B:ALA202 4.5 9.8 1.0 CD A:GLN257 4.5 11.4 1.0 N B:GLY201 4.6 8.9 1.0 O B:HOH439 4.6 13.8 1.0 C B:LEU200 4.6 9.7 1.0 O A:HOH494 4.6 23.0 1.0 O B:HOH415 4.8 12.4 1.0 CG A:GLN257 4.8 11.2 1.0 O B:HOH504 4.9 24.3 1.0 O B:HOH419 5.0 11.8 1.0

K.Tan, M.Zhou, K.Kwon, W.F.Anderson, A.Joachimiak. The Crystal Structure of A Functionally Unknown Protein From Listeria Monocytogenes Egd-E To Be Published.