Sodium in PDB 4e71: Crystal Structure of the Rho Gtpase Binding Domain of Plexin B2

The structure of Crystal Structure of the Rho Gtpase Binding Domain of Plexin B2, PDB code: 4e71 was solved by X.Guan, H.Wang, W.Tempel, Y.Tong, C.H.Arrowsmith, A.M.Edwards, C.Bountra, J.Weigelt, H.Park, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.74 / 2.26
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	48.380, 48.380, 157.360, 90.00, 90.00, 120.00
R / Rfree (%)	24.4 / 28.5

The binding sites of Sodium atom in the Crystal Structure of the Rho Gtpase Binding Domain of Plexin B2 (pdb code 4e71). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Rho Gtpase Binding Domain of Plexin B2, PDB code: 4e71:

Sodium binding site 1 out of 1 in the Crystal Structure of the Rho Gtpase Binding Domain of Plexin B2


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Rho Gtpase Binding Domain of Plexin B2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1601 b:51.5 occ:0.50 O A:HOH1701 2.4 46.5 1.0 OE1 A:GLN1489 2.5 46.9 1.0 O A:CYS1484 2.5 53.1 1.0 CD A:GLN1489 3.4 47.8 1.0 C A:CYS1484 3.5 55.2 1.0 NE2 A:GLN1489 3.6 42.4 1.0 CA A:ASP1485 3.8 48.3 1.0 N A:ASP1485 4.0 51.6 1.0 N A:THR1486 4.2 43.3 1.0 OD1 A:ASP1485 4.4 57.0 1.0 C A:ASP1485 4.4 50.2 1.0 SG A:CYS1484 4.5 64.1 1.0 CB A:CYS1484 4.5 58.0 1.0 CA A:CYS1484 4.6 54.6 1.0 CG2 A:THR1486 4.7 38.4 1.0 CG A:GLN1489 4.9 38.5 1.0

X.Guan, H.Wang, W.Tempel, Y.Tong, C.H.Arrowsmith, A.M.Edwards, C.Bountra, J.Weigelt, H.Park. Crystal Structure of the Rho Gtpase Binding Domain of Plexin B2 To Be Published.