Sodium in PDB 4e27: Crystal Structure of A Pentameric Capsid Protein Isolated From Metagenomic Phage Sequences Solved By Iodide Sad Phasing

The structure of Crystal Structure of A Pentameric Capsid Protein Isolated From Metagenomic Phage Sequences Solved By Iodide Sad Phasing, PDB code: 4e27 was solved by T.K.Craig, J.Abendroth, D.Lorimer, A.B.Burgin Jr, A.Segall, F.Rohwer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.51 / 2.40
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	135.710, 68.360, 107.830, 90.00, 93.69, 90.00
R / Rfree (%)	20.2 / 25.6

The structure of Crystal Structure of A Pentameric Capsid Protein Isolated From Metagenomic Phage Sequences Solved By Iodide Sad Phasing also contains other interesting chemical elements:

Iodine

(I)

28 atoms

The binding sites of Sodium atom in the Crystal Structure of A Pentameric Capsid Protein Isolated From Metagenomic Phage Sequences Solved By Iodide Sad Phasing (pdb code 4e27). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A Pentameric Capsid Protein Isolated From Metagenomic Phage Sequences Solved By Iodide Sad Phasing, PDB code: 4e27:

Sodium binding site 1 out of 1 in the Crystal Structure of A Pentameric Capsid Protein Isolated From Metagenomic Phage Sequences Solved By Iodide Sad Phasing


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Pentameric Capsid Protein Isolated From Metagenomic Phage Sequences Solved By Iodide Sad Phasing within 5.0Å range: probe atom residue distance (Å) B Occ B:Na205 b:30.0 occ:1.00 O D:ALA155 2.3 16.4 1.0 O D:HOH338 2.6 28.4 1.0 OE2 B:GLU96 2.7 12.8 1.0 OE1 B:GLU96 3.1 16.8 1.0 CD B:GLU96 3.2 13.8 1.0 C D:ALA155 3.4 10.7 1.0 NH2 D:ARG158 3.6 20.4 1.0 OE2 D:GLU72 3.8 39.5 1.0 CB D:ALA155 4.1 12.1 1.0 CA D:ALA155 4.2 11.4 1.0 NE D:ARG158 4.3 20.4 1.0 N D:GLU156 4.4 8.9 1.0 CZ D:ARG158 4.4 20.6 1.0 CA D:GLU156 4.5 7.3 1.0 CD D:GLU72 4.6 38.0 1.0 CG B:GLU96 4.7 6.5 1.0 CG D:GLU72 4.8 30.7 1.0 CB B:ALA97 4.9 13.3 1.0 O B:GLU96 4.9 14.6 1.0 CB D:GLU72 4.9 22.4 1.0 CA B:ALA97 5.0 15.3 1.0

T.K.Craig, J.Abendroth, D.Lorimer, A.B.Burgin Jr, A.Segall, F.Rohwer. Crystal Structure of A Pentameric Capsid Protein Isolated From Metagenomic Phage Sequences Solved By Iodide Sad Phasing To Be Published.