Sodium in PDB 4e1j: Crystal Structure of Glycerol Kinase in Complex with Glycerol From Sinorhizobium Meliloti 1021

All present enzymatic activity of Crystal Structure of Glycerol Kinase in Complex with Glycerol From Sinorhizobium Meliloti 1021:
2.7.1.30;

The structure of Crystal Structure of Glycerol Kinase in Complex with Glycerol From Sinorhizobium Meliloti 1021, PDB code: 4e1j was solved by R.Agarwal, S.Chamala, B.Evans, R.Foti, A.Gizzi, B.Hillerich, A.Kar, J.Lafleur, R.Siedel, G.Villigas, W.Zencheck, S.C.Almo, S.Swaminathan, Newyork Structural Genomics Research Consortium (Nysgrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.57 / 2.33
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	93.220, 101.975, 107.548, 90.00, 90.03, 90.00
R / Rfree (%)	23 / 29

The structure of Crystal Structure of Glycerol Kinase in Complex with Glycerol From Sinorhizobium Meliloti 1021 also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Sodium atom in the Crystal Structure of Glycerol Kinase in Complex with Glycerol From Sinorhizobium Meliloti 1021 (pdb code 4e1j). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Glycerol Kinase in Complex with Glycerol From Sinorhizobium Meliloti 1021, PDB code: 4e1j:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of Glycerol Kinase in Complex with Glycerol From Sinorhizobium Meliloti 1021


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Glycerol Kinase in Complex with Glycerol From Sinorhizobium Meliloti 1021 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na602 b:56.8 occ:1.00 O A:MSE23 3.0 57.5 1.0 O A:SER22 4.1 55.6 1.0 OE1 A:GLN21 4.1 62.3 1.0 C A:MSE23 4.1 56.5 1.0 N A:MSE23 4.2 56.2 1.0 C A:SER22 4.2 56.1 1.0 CB A:GLN21 4.3 54.9 1.0 CG A:GLN21 4.3 57.9 1.0 O A:GLY90 4.3 44.9 1.0 CD A:GLN21 4.4 62.5 1.0 CA A:MSE23 4.5 56.6 1.0 OH A:TYR27 4.7 47.2 1.0 C A:GLN21 4.9 55.1 1.0 O A:GLN21 4.9 54.7 1.0 CG2 A:ILE91 5.0 42.9 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of Glycerol Kinase in Complex with Glycerol From Sinorhizobium Meliloti 1021


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Glycerol Kinase in Complex with Glycerol From Sinorhizobium Meliloti 1021 within 5.0Å range: probe atom residue distance (Å) B Occ C:Na603 b:37.5 occ:1.00 O C:HOH704 2.8 43.7 1.0 O C:SER486 3.3 62.4 1.0 OG C:SER486 3.3 65.8 1.0 O C:HOH718 3.3 51.8 1.0 O C:HOH724 3.9 55.6 1.0 C C:SER486 4.2 63.0 1.0 CA C:SER486 4.4 63.0 1.0 CB C:SER486 4.4 63.0 1.0

R.Agarwal, S.C.Almo, S.Swaminathan. Crystal Structure of Glycerol Kinase in Complex with Glycerol From Sinorhizobium Meliloti 1021 To Be Published.