Sodium in PDB 4e14: Crystal Structure of Kynurenine Formamidase Conjugated with Phenylmethylsulfonyl Fluoride

Enzymatic activity of Crystal Structure of Kynurenine Formamidase Conjugated with Phenylmethylsulfonyl Fluoride

All present enzymatic activity of Crystal Structure of Kynurenine Formamidase Conjugated with Phenylmethylsulfonyl Fluoride:
3.5.1.9;

Protein crystallography data

The structure of Crystal Structure of Kynurenine Formamidase Conjugated with Phenylmethylsulfonyl Fluoride, PDB code: 4e14 was solved by Q.Han, H.Robinson, J.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	42.64 / 1.64
*Space group*	C 1 2 1
*Cell size a, b, c (Å), α, β, γ (°)*	75.471, 47.029, 85.282, 90.00, 90.56, 90.00
*R / R_free (%)*	21.7 / 24.8

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Kynurenine Formamidase Conjugated with Phenylmethylsulfonyl Fluoride (pdb code 4e14). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Kynurenine Formamidase Conjugated with Phenylmethylsulfonyl Fluoride, PDB code: 4e14:

Sodium binding site 1 out of 1 in 4e14

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Sodium Binding Sites List in 4e14

Sodium binding site 1 out of 1 in the Crystal Structure of Kynurenine Formamidase Conjugated with Phenylmethylsulfonyl Fluoride

Mono view

Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Kynurenine Formamidase Conjugated with Phenylmethylsulfonyl Fluoride within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Na405 b:33.9 occ:0.50	O	A:HOH503	2.2	29.9	1.0
	O	A:HOH502	2.2	28.0	1.0
	OG	A:SER150	2.3	30.5	0.5
	CB	A:SER150	3.5	31.5	0.5
	CB	A:SER150	3.6	31.2	0.5
	N	A:SER150	3.6	28.8	1.0
	N	A:SER149	3.7	29.1	1.0
	C	A:SER149	4.0	30.0	1.0
	O	A:GLN78	4.2	28.1	1.0
	CA	A:SER150	4.2	29.0	0.5
	CA	A:SER150	4.2	28.7	0.5
	CA	A:SER149	4.4	30.4	1.0
	CG1	A:VAL148	4.6	27.8	1.0
	C	A:VAL148	4.7	29.4	1.0
	O	A:SER149	4.7	31.6	1.0
	CA	A:VAL148	4.8	28.6	1.0
	CG2	A:VAL148	4.8	29.4	1.0
	OG	A:SER150	4.8	26.1	0.5
	CB	A:VAL148	4.9	28.0	1.0
	CB	A:SER149	5.0	32.9	1.0
	CA	A:PRO80	5.0	24.0	1.0
	N	A:PRO80	5.0	24.5	1.0

Reference:

Q.Han, H.Robinson, J.Li. Biochemical Identification and Crystal Structure of Kynurenine Formamidase From Drosophila Melanogaster. Biochem.J. V. 446 253 2012.
ISSN: ISSN 0264-6021
PubMed: 22690733
DOI: 10.1042/BJ20120416

Page generated: Mon Oct 7 15:05:36 2024

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