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Sodium in PDB 4ano: Crystal Structure Geobacillus Thermodenitrificans Essb Cytoplasmic Fragment

Protein crystallography data

The structure of Crystal Structure Geobacillus Thermodenitrificans Essb Cytoplasmic Fragment, PDB code: 4ano was solved by M.Zoltner, P.Fyfe, W.N.Hunter, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.61 / 1.70
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 74.622, 74.622, 83.545, 90.00, 90.00, 90.00
R / Rfree (%) 20.54 / 25.262

Other elements in 4ano:

The structure of Crystal Structure Geobacillus Thermodenitrificans Essb Cytoplasmic Fragment also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure Geobacillus Thermodenitrificans Essb Cytoplasmic Fragment (pdb code 4ano). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure Geobacillus Thermodenitrificans Essb Cytoplasmic Fragment, PDB code: 4ano:

Sodium binding site 1 out of 1 in 4ano

Go back to Sodium Binding Sites List in 4ano
Sodium binding site 1 out of 1 in the Crystal Structure Geobacillus Thermodenitrificans Essb Cytoplasmic Fragment


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure Geobacillus Thermodenitrificans Essb Cytoplasmic Fragment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1222

b:61.7
occ:1.00
O A:HOH2177 2.2 57.9 1.0
O A:HOH2253 2.8 56.0 1.0
O A:HOH2173 2.9 30.8 1.0
OD2 A:ASP138 3.3 44.4 1.0
CG A:ASP138 4.1 35.3 1.0
CB A:ASP138 4.7 26.0 1.0
OD1 A:ASP138 4.9 41.6 1.0

Reference:

M.Zoltner, D.G.Norman, P.K.Fyfe, H.El Mkami, T.Palmer, W.N.Hunter. The Architecture of Essb, An Integral Membrane Component of the Type VII Secretion System. Structure V. 21 595 2013.
ISSN: ISSN 0969-2126
PubMed: 23499020
DOI: 10.1016/J.STR.2013.02.007
Page generated: Tue Dec 15 06:33:02 2020

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