Sodium in PDB 4agt: Crystal Structure of Fucose Binding Lectin From Aspergillus Fumigatus (Afl) in Complex with FUC1-6GLCNAC.

The structure of Crystal Structure of Fucose Binding Lectin From Aspergillus Fumigatus (Afl) in Complex with FUC1-6GLCNAC., PDB code: 4agt was solved by J.Houser, J.Komarek, N.Kostlanova, M.Lahmann, G.Cioci, A.Varrot, A.Imberty, M.Wimmerova, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	77.74 / 2.00
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	47.410, 88.350, 79.780, 90.00, 102.99, 90.00
R / Rfree (%)	17.215 / 21.17

The binding sites of Sodium atom in the Crystal Structure of Fucose Binding Lectin From Aspergillus Fumigatus (Afl) in Complex with FUC1-6GLCNAC. (pdb code 4agt). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Fucose Binding Lectin From Aspergillus Fumigatus (Afl) in Complex with FUC1-6GLCNAC., PDB code: 4agt:

Sodium binding site 1 out of 1 in the Crystal Structure of Fucose Binding Lectin From Aspergillus Fumigatus (Afl) in Complex with FUC1-6GLCNAC.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Fucose Binding Lectin From Aspergillus Fumigatus (Afl) in Complex with FUC1-6GLCNAC. within 5.0Å range: probe atom residue distance (Å) B Occ A:Na700 b:11.6 occ:1.00 O A:HOH2067 2.4 36.0 1.0 O A:HOH2234 2.4 38.6 1.0 O A:GLY59 2.5 12.7 1.0 O A:HOH2066 2.6 13.0 1.0 O A:HOH2017 2.7 11.7 1.0 O A:HOH2068 2.7 41.8 1.0 O A:HOH2018 2.7 16.0 1.0 C A:GLY59 3.5 12.3 1.0 O A:HOH2207 3.8 29.3 1.0 CA A:GLY59 3.8 11.8 1.0 O A:HOH2116 4.2 32.4 1.0 OE2 A:GLU265 4.2 19.0 1.0 O A:ARG12 4.3 11.0 1.0 O B:HOH2011 4.5 25.4 1.0 O A:HOH2042 4.5 27.2 1.0 O A:HOH2016 4.6 23.8 1.0 O B:HOH2008 4.7 29.6 1.0 N A:SER60 4.7 11.9 1.0 O A:SER60 4.7 12.4 1.0 C A:SER60 4.8 11.7 1.0 O A:HOH2041 4.8 15.2 1.0 O B:HOH2012 4.8 27.1 1.0 O A:HOH2024 4.8 8.0 1.0 O A:HOH2062 4.9 24.6 1.0 O A:HOH2038 4.9 36.6 1.0

J.Houser, J.Komarek, G.Cioci, A.Varrot, A.Imberty, M.Wimmerova. Structural Insights Into Aspergillus Fumigatus Lectin Specificity: Afl Binding Sites Are Functionally Non-Equivalent Acta Crystallogr.,Sect.D V. 71 442 2015.
ISSN: ISSN 0907-4449
PubMed: 25760594
DOI: 10.1107/S1399004714026595