Sodium in PDB 3wwv: C-Terminal Domain of Stomatin Operon Partner Protein 1510-C From Pyrococcus Horikoshii

The structure of C-Terminal Domain of Stomatin Operon Partner Protein 1510-C From Pyrococcus Horikoshii, PDB code: 3wwv was solved by H.Yokoyama, I.Matsui, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	18.96 / 2.40
Space group	P 62 2 2
Cell size a, b, c (Å), α, β, γ (°)	75.847, 75.847, 43.631, 90.00, 90.00, 120.00
R / Rfree (%)	22.1 / 25.8

The binding sites of Sodium atom in the C-Terminal Domain of Stomatin Operon Partner Protein 1510-C From Pyrococcus Horikoshii (pdb code 3wwv). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the C-Terminal Domain of Stomatin Operon Partner Protein 1510-C From Pyrococcus Horikoshii, PDB code: 3wwv:

Sodium binding site 1 out of 1 in the C-Terminal Domain of Stomatin Operon Partner Protein 1510-C From Pyrococcus Horikoshii


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of C-Terminal Domain of Stomatin Operon Partner Protein 1510-C From Pyrococcus Horikoshii within 5.0Å range: probe atom residue distance (Å) B Occ A:Na501 b:39.0 occ:0.50 O A:HOH620 2.1 42.1 0.5 O A:HOH619 2.4 42.7 1.0 O A:PHE409 3.9 33.4 1.0 O A:LYS408 3.9 25.9 1.0 O A:SER407 4.2 23.4 1.0 CB A:PRO392 4.4 28.1 1.0 C A:PHE409 4.4 35.3 1.0 O A:ASN410 4.5 46.5 1.0 C A:LYS408 4.6 26.1 1.0 CG A:PRO392 4.6 28.0 1.0 CA A:PHE409 4.7 30.8 1.0 N A:PHE409 4.9 27.6 1.0

H.Yokoyama, I.Matsui. Crystal Structure of the Stomatin Operon Partner Protein From Pyrococcus Horikoshii Indicates the Formation of A Multimeric Assembly Febs Open Bio V. 4 804 2014.
ISSN: ESSN 2211-5463
DOI: 10.1016/J.FOB.2014.09.002