Sodium in PDB 3wh6: Crystal Structure of GH1 Beta-Glucosidase TD2F2 Glucose Complex

All present enzymatic activity of Crystal Structure of GH1 Beta-Glucosidase TD2F2 Glucose Complex:
3.2.1.21;

The structure of Crystal Structure of GH1 Beta-Glucosidase TD2F2 Glucose Complex, PDB code: 3wh6 was solved by T.Jo, S.Fushinobu, T.Uchiyama, K.Yaoi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.23 / 1.60
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	68.087, 68.454, 95.863, 90.00, 90.00, 90.00
R / Rfree (%)	15.7 / 19

The binding sites of Sodium atom in the Crystal Structure of GH1 Beta-Glucosidase TD2F2 Glucose Complex (pdb code 3wh6). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of GH1 Beta-Glucosidase TD2F2 Glucose Complex, PDB code: 3wh6:

Sodium binding site 1 out of 1 in the Crystal Structure of GH1 Beta-Glucosidase TD2F2 Glucose Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of GH1 Beta-Glucosidase TD2F2 Glucose Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Na506 b:29.0 occ:1.00 O A:HIS321 2.3 23.0 1.0 O A:HOH845 2.4 25.2 1.0 O A:HOH846 2.4 34.0 1.0 O A:HOH793 2.4 29.6 1.0 O A:HOH794 2.4 25.0 1.0 O A:HOH847 2.6 37.8 1.0 C A:HIS321 3.3 23.1 1.0 N A:HIS321 3.7 23.7 1.0 CA A:HIS321 3.9 23.9 1.0 CB A:HIS321 4.2 28.4 1.0 NE2 A:GLN371 4.3 22.0 1.0 OE1 A:GLN371 4.3 19.7 1.0 N A:THR322 4.4 21.6 1.0 O A:THR322 4.6 22.4 1.0 CD A:GLN371 4.7 18.0 1.0 CA A:THR322 4.7 19.3 1.0 C A:PRO320 4.8 26.1 1.0 C A:THR322 5.0 21.9 1.0

T.Jo, T.Uchiyama, K.Yaoi, K.Miyazaki, S.Fushinobu. Crystal Structure of GH1 Beta-Glucosidase TD2F2 To Be Published.