Sodium in PDB 3wh5: Crystal Structure of GH1 Beta-Glucosidase TD2F2

All present enzymatic activity of Crystal Structure of GH1 Beta-Glucosidase TD2F2:
3.2.1.21;

The structure of Crystal Structure of GH1 Beta-Glucosidase TD2F2, PDB code: 3wh5 was solved by T.Jo, S.Fushinobu, T.Uchiyama, K.Yaoi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	26.08 / 1.60
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	68.802, 69.624, 96.057, 90.00, 90.00, 90.00
R / Rfree (%)	13.7 / 16.7

The binding sites of Sodium atom in the Crystal Structure of GH1 Beta-Glucosidase TD2F2 (pdb code 3wh5). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of GH1 Beta-Glucosidase TD2F2, PDB code: 3wh5:

Sodium binding site 1 out of 1 in the Crystal Structure of GH1 Beta-Glucosidase TD2F2


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of GH1 Beta-Glucosidase TD2F2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na503 b:20.8 occ:1.00 O A:HOH960 2.2 13.9 1.0 O A:HOH726 2.3 21.2 1.0 O A:HIS321 2.4 11.7 1.0 O A:HOH991 2.4 20.7 1.0 O A:HOH990 2.4 24.9 1.0 O A:HOH827 2.5 28.2 1.0 C A:HIS321 3.5 10.2 1.0 N A:HIS321 4.1 13.7 1.0 O A:HOH879 4.1 28.9 1.0 CA A:HIS321 4.2 12.1 1.0 OE1 A:GLN371 4.2 12.3 1.0 NE2 A:GLN371 4.3 15.6 1.0 O A:HOH871 4.3 24.5 1.0 CB A:HIS321 4.4 14.4 1.0 N A:THR322 4.4 11.4 1.0 O A:THR322 4.5 12.9 1.0 CA A:THR322 4.7 10.8 1.0 CD A:GLN371 4.7 14.6 1.0 C A:THR322 4.8 11.8 1.0

T.Jo, T.Uchiyama, K.Yaoi, K.Miyazaki, S.Fushinobu. Crystal Structure of GH1 Beta-Glucosidase TD2F2 To Be Published.