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Sodium in PDB 3wdr: Crystal Structure of Beta-Mannanase From A Symbiotic Protist of the Termite Reticulitermes Speratus Complexed with Gluco-Manno- Oligosaccharide
Enzymatic activity of Crystal Structure of Beta-Mannanase From A Symbiotic Protist of the Termite Reticulitermes Speratus Complexed with Gluco-Manno- Oligosaccharide
All present enzymatic activity of Crystal Structure of Beta-Mannanase From A Symbiotic Protist of the Termite Reticulitermes Speratus Complexed with Gluco-Manno- Oligosaccharide:
3.2.1.78;
3.2.1.78;
Protein crystallography data
The structure of Crystal Structure of Beta-Mannanase From A Symbiotic Protist of the Termite Reticulitermes Speratus Complexed with Gluco-Manno- Oligosaccharide, PDB code: 3wdr
was solved by
H.Tsukagoshi,
T.Ishida,
K.K.Touhara,
K.Igarashi,
M.Samejima,
S.Fushinobu,
K.Kitamoto,
M.Arioka,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 36.51 / 1.40 |
| Space group | P 1 21 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 45.522, 61.644, 58.068, 90.00, 92.27, 90.00 |
| R / Rfree (%) | 13.7 / 16 |
Other elements in 3wdr:
The structure of Crystal Structure of Beta-Mannanase From A Symbiotic Protist of the Termite Reticulitermes Speratus Complexed with Gluco-Manno- Oligosaccharide also contains other interesting chemical elements:
| Magnesium | (Mg) | 2 atoms |
Sodium Binding Sites:
The binding sites of Sodium atom in the Crystal Structure of Beta-Mannanase From A Symbiotic Protist of the Termite Reticulitermes Speratus Complexed with Gluco-Manno- Oligosaccharide
(pdb code 3wdr). This binding sites where shown within
5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Beta-Mannanase From A Symbiotic Protist of the Termite Reticulitermes Speratus Complexed with Gluco-Manno- Oligosaccharide, PDB code: 3wdr:
Jump to Sodium binding site number: 1; 2;
In total 2 binding sites of Sodium where determined in the Crystal Structure of Beta-Mannanase From A Symbiotic Protist of the Termite Reticulitermes Speratus Complexed with Gluco-Manno- Oligosaccharide, PDB code: 3wdr:
Jump to Sodium binding site number: 1; 2;
Sodium binding site 1 out of 2 in 3wdr
Go back to
Sodium Binding Sites List in 3wdr
Sodium binding site 1 out
of 2 in the Crystal Structure of Beta-Mannanase From A Symbiotic Protist of the Termite Reticulitermes Speratus Complexed with Gluco-Manno- Oligosaccharide
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 1 of Crystal Structure of Beta-Mannanase From A Symbiotic Protist of the Termite Reticulitermes Speratus Complexed with Gluco-Manno- Oligosaccharide within 5.0Å range:
|
Sodium binding site 2 out of 2 in 3wdr
Go back to
Sodium Binding Sites List in 3wdr
Sodium binding site 2 out
of 2 in the Crystal Structure of Beta-Mannanase From A Symbiotic Protist of the Termite Reticulitermes Speratus Complexed with Gluco-Manno- Oligosaccharide
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 2 of Crystal Structure of Beta-Mannanase From A Symbiotic Protist of the Termite Reticulitermes Speratus Complexed with Gluco-Manno- Oligosaccharide within 5.0Å range:
|
Reference:
H.Tsukagoshi,
A.Nakamura,
T.Ishida,
K.K.Touhara,
M.Otagiri,
S.Moriya,
M.Samejima,
K.Igarashi,
S.Fushinobu,
K.Kitamoto,
M.Arioka.
Structural and Biochemical Analyses of Glycoside Hydrolase Family 26 Beta-Mannanase From A Symbiotic Protist of the Termite Reticulitermes Speratus J.Biol.Chem. V. 289 10843 2014.
ISSN: ISSN 0021-9258
PubMed: 24570006
DOI: 10.1074/JBC.M114.555383
Page generated: Mon Oct 7 13:56:40 2024
ISSN: ISSN 0021-9258
PubMed: 24570006
DOI: 10.1074/JBC.M114.555383
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