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Sodium in PDB 3ul5: Saccharum Officinarum Canecystatin-1 in Space Group C2221

Protein crystallography data

The structure of Saccharum Officinarum Canecystatin-1 in Space Group C2221, PDB code: 3ul5 was solved by N.F.Valadares, H.M.Pereira, R.Oliveira-Silva, R.C.Garratt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.39 / 2.30
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 99.768, 113.993, 86.776, 90.00, 90.00, 90.00
R / Rfree (%) 22.5 / 25.2

Sodium Binding Sites:

The binding sites of Sodium atom in the Saccharum Officinarum Canecystatin-1 in Space Group C2221 (pdb code 3ul5). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Saccharum Officinarum Canecystatin-1 in Space Group C2221, PDB code: 3ul5:

Sodium binding site 1 out of 1 in 3ul5

Go back to Sodium Binding Sites List in 3ul5
Sodium binding site 1 out of 1 in the Saccharum Officinarum Canecystatin-1 in Space Group C2221


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Saccharum Officinarum Canecystatin-1 in Space Group C2221 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na401

b:10.1
occ:0.50
O A:HOH108 3.0 13.3 1.0
NZ A:LYS43 3.2 21.9 1.0
CE A:LYS43 4.0 22.4 1.0
CG B:GLN96 4.1 23.3 1.0
CD A:LYS43 4.4 17.5 1.0
OE1 B:GLN96 4.4 22.8 1.0
O3 B:GOL201 4.5 36.0 1.0
CD B:GLN96 4.6 22.9 1.0
O B:LEU97 4.6 13.5 1.0
OE2 A:GLU39 4.7 24.3 1.0

Reference:

N.F.Valadares, R.De Oliveira-Silva, I.A.Cavini, I.A.Marques, H.D.Pereira, A.Soares-Costa, F.Henrique-Silva, H.R.Kalbitzer, C.E.Munte, R.C.Garratt. X-Ray Crystallography and uc(Nmr) Studies of Domain-Swapped Canecystatin-1. Febs J. V. 280 1028 2013.
ISSN: ISSN 1742-464X
PubMed: 23241243
DOI: 10.1111/FEBS.12095
Page generated: Tue Dec 15 06:27:20 2020

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