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Sodium in PDB 3ua7: Crystal Structure of the Human Fyn SH3 Domain in Complex with A Peptide From the Hepatitis C Virus NS5A-Protein

Enzymatic activity of Crystal Structure of the Human Fyn SH3 Domain in Complex with A Peptide From the Hepatitis C Virus NS5A-Protein

All present enzymatic activity of Crystal Structure of the Human Fyn SH3 Domain in Complex with A Peptide From the Hepatitis C Virus NS5A-Protein:
2.7.10.2;

Protein crystallography data

The structure of Crystal Structure of the Human Fyn SH3 Domain in Complex with A Peptide From the Hepatitis C Virus NS5A-Protein, PDB code: 3ua7 was solved by J.M.Martin-Garcia, J.Ruiz-Sanz, I.Luque, A.Camara-Artigas, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 1.50
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 51.390, 51.390, 185.590, 90.00, 90.00, 90.00
R / Rfree (%) 18.5 / 23.1

Other elements in 3ua7:

The structure of Crystal Structure of the Human Fyn SH3 Domain in Complex with A Peptide From the Hepatitis C Virus NS5A-Protein also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Zinc (Zn) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of the Human Fyn SH3 Domain in Complex with A Peptide From the Hepatitis C Virus NS5A-Protein (pdb code 3ua7). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Human Fyn SH3 Domain in Complex with A Peptide From the Hepatitis C Virus NS5A-Protein, PDB code: 3ua7:

Sodium binding site 1 out of 1 in 3ua7

Go back to Sodium Binding Sites List in 3ua7
Sodium binding site 1 out of 1 in the Crystal Structure of the Human Fyn SH3 Domain in Complex with A Peptide From the Hepatitis C Virus NS5A-Protein


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Human Fyn SH3 Domain in Complex with A Peptide From the Hepatitis C Virus NS5A-Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na145

b:28.4
occ:1.00
 O A:GLY83 2.2 16.3 1.0
O B:GLY83 2.4 15.3 1.0
O A:HOH167 2.5 31.2 1.0
O D:HOH66 2.6 34.5 1.0
C A:GLY83 3.2 14.6 1.0
C B:GLY83 3.4 13.4 1.0
CA A:GLY83 3.8 14.7 1.0
CA B:GLY83 3.9 13.7 1.0
O B:HOH28 4.0 34.4 1.0
N A:VAL84 4.4 13.7 1.0
O C:THR127 4.5 18.9 1.0
N B:VAL84 4.6 13.9 1.0
O D:THR127 4.6 17.0 1.0
C A:VAL84 4.7 11.7 1.0
CA A:VAL84 4.8 12.0 1.0
N A:THR85 4.9 14.8 1.0
C B:VAL84 4.9 14.3 1.0
CA B:VAL84 5.0 13.2 1.0
N B:THR85 5.0 14.8 1.0

Reference:

J.M.Martin-Garcia, I.Luque, J.Ruiz-Sanz, A.Camara-Artigas. The Promiscuous Binding of the Fyn SH3 Domain to A Peptide From the NS5A Protein. Acta Crystallogr.,Sect.D V. 68 1030 2012.
ISSN: ISSN 0907-4449
PubMed: 22868769
DOI: 10.1107/S0907444912019798
Page generated: Mon Oct 7 13:26:52 2024

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