Sodium in PDB 3u21: Crystal Structure of A Fragment of Nuclear Factor Related to Kappa-B- Binding Protein (Residues 370-495) (Nfrkb) From Homo Sapiens at 2.18 A Resolution

The structure of Crystal Structure of A Fragment of Nuclear Factor Related to Kappa-B- Binding Protein (Residues 370-495) (Nfrkb) From Homo Sapiens at 2.18 A Resolution, PDB code: 3u21 was solved by Joint Center For Structural Genomics (Jcsg), Partnership For Stem Cellbiology, Partnership For Stem Cell Biology (Stemcell), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.47 / 2.18
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	60.942, 60.942, 130.839, 90.00, 90.00, 90.00
R / Rfree (%)	23.1 / 27

The binding sites of Sodium atom in the Crystal Structure of A Fragment of Nuclear Factor Related to Kappa-B- Binding Protein (Residues 370-495) (Nfrkb) From Homo Sapiens at 2.18 A Resolution (pdb code 3u21). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A Fragment of Nuclear Factor Related to Kappa-B- Binding Protein (Residues 370-495) (Nfrkb) From Homo Sapiens at 2.18 A Resolution, PDB code: 3u21:

Sodium binding site 1 out of 1 in the Crystal Structure of A Fragment of Nuclear Factor Related to Kappa-B- Binding Protein (Residues 370-495) (Nfrkb) From Homo Sapiens at 2.18 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Fragment of Nuclear Factor Related to Kappa-B- Binding Protein (Residues 370-495) (Nfrkb) From Homo Sapiens at 2.18 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Na500 b:33.6 occ:1.00 O B:HOH521 2.3 29.3 1.0 OD1 B:ASN373 2.3 27.9 1.0 O B:ILE375 2.3 33.5 1.0 O A:ILE375 2.4 33.0 1.0 OD1 A:ASN373 2.4 32.9 1.0 CG B:ASN373 3.1 31.2 1.0 CG A:ASN373 3.2 38.7 1.0 ND2 B:ASN373 3.4 28.7 1.0 ND2 A:ASN373 3.4 36.9 1.0 C B:ILE375 3.4 33.3 1.0 C A:ILE375 3.4 33.7 1.0 CB A:ILE375 3.8 34.5 1.0 N B:ILE375 3.9 33.5 1.0 CA B:ILE375 4.0 32.5 1.0 CA A:ILE375 4.0 33.5 1.0 N A:ILE375 4.0 35.1 1.0 CB B:ILE375 4.1 34.7 1.0 O A:ASN373 4.3 46.6 1.0 O B:ASN373 4.4 44.2 1.0 CB B:ASN373 4.5 37.0 1.0 N B:SER376 4.6 33.2 1.0 N A:SER376 4.6 33.6 1.0 CB A:ASN373 4.6 42.4 1.0 C B:ASN373 4.6 40.0 1.0 C A:ASN373 4.7 45.8 1.0 CG1 A:ILE375 4.8 37.5 1.0 CG2 A:ILE375 4.8 35.3 1.0 N B:ASN373 4.8 49.0 1.0 CA B:ASN373 4.9 39.7 1.0 N A:ASN373 4.9 51.1 1.0 CA B:SER376 5.0 34.7 1.0 CA A:ASN373 5.0 44.9 1.0 CG1 B:ILE375 5.0 36.5 1.0 C B:GLU374 5.0 34.7 1.0

A.Kumar, S.Mocklinghoff, F.Yumoto, L.Jaroszewski, C.L.Farr, A.Grzechnik, P.Nguyen, C.X.Weichenberger, H.J.Chiu, H.E.Klock, M.A.Elsliger, A.M.Deacon, A.Godzik, S.A.Lesley, B.R.Conklin, R.J.Fletterick, I.A.Wilson. Structure of A Novel Winged-Helix Like Domain From Human Nfrkb Protein. Plos One V. 7 43761 2012.
ISSN: ESSN 1932-6203
PubMed: 22984442
DOI: 10.1371/JOURNAL.PONE.0043761