Atomistry » Sodium » PDB 3u0a-3upw » 3u0s
Atomistry »
  Sodium »
    PDB 3u0a-3upw »
      3u0s »

Sodium in PDB 3u0s: Crystal Structure of An Enzyme Redesigned Through Multiplayer Online Gaming: CE6

Enzymatic activity of Crystal Structure of An Enzyme Redesigned Through Multiplayer Online Gaming: CE6

All present enzymatic activity of Crystal Structure of An Enzyme Redesigned Through Multiplayer Online Gaming: CE6:
3.1.8.2;

Protein crystallography data

The structure of Crystal Structure of An Enzyme Redesigned Through Multiplayer Online Gaming: CE6, PDB code: 3u0s was solved by J.B.Bale, B.W.Shen, B.L.Stoddard, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.15 / 2.60
Space group P 41
Cell size a, b, c (Å), α, β, γ (°) 87.002, 87.002, 163.330, 90.00, 90.00, 90.00
R / Rfree (%) 17.1 / 19.8

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of An Enzyme Redesigned Through Multiplayer Online Gaming: CE6 (pdb code 3u0s). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of An Enzyme Redesigned Through Multiplayer Online Gaming: CE6, PDB code: 3u0s:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 3u0s

Go back to Sodium Binding Sites List in 3u0s
Sodium binding site 1 out of 2 in the Crystal Structure of An Enzyme Redesigned Through Multiplayer Online Gaming: CE6


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of An Enzyme Redesigned Through Multiplayer Online Gaming: CE6 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na342

b:0.1
occ:1.00
O1 B:SO4344 2.4 0.3 1.0
S B:SO4344 3.6 0.3 1.0
O3 B:SO4344 4.0 0.0 1.0
O4 B:SO4344 4.1 1.0 1.0
O2 B:SO4344 4.8 1.0 1.0

Sodium binding site 2 out of 2 in 3u0s

Go back to Sodium Binding Sites List in 3u0s
Sodium binding site 2 out of 2 in the Crystal Structure of An Enzyme Redesigned Through Multiplayer Online Gaming: CE6


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of An Enzyme Redesigned Through Multiplayer Online Gaming: CE6 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na343

b:0.4
occ:1.00
O2 B:SO4344 2.1 1.0 1.0
S B:SO4344 3.3 0.3 1.0
OH B:TYR82 3.4 44.8 1.0
O4 B:SO4344 3.5 1.0 1.0
CB B:PRO154 3.6 42.7 1.0
O1 B:SO4344 3.8 0.3 1.0
CE2 B:TYR82 4.0 43.3 1.0
CZ B:TYR82 4.2 44.4 1.0
CG B:PRO154 4.2 42.3 1.0
O3 B:SO4344 4.5 0.0 1.0
CA B:PRO154 4.9 41.8 1.0

Reference:

C.B.Eiben, J.B.Siegel, J.B.Bale, S.Cooper, F.Khatib, B.W.Shen, F.Players, B.L.Stoddard, Z.Popovic, D.Baker. Increased Diels-Alderase Activity Through Backbone Remodeling Guided By Foldit Players. Nat.Biotechnol. V. 30 190 2012.
ISSN: ISSN 1087-0156
PubMed: 22267011
DOI: 10.1038/NBT.2109
Page generated: Mon Oct 7 13:24:52 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy