Sodium in PDB 3sd7: 1.7 Angstrom Resolution Crystal Structure of Putative Phosphatase From Clostridium Difficile

The structure of 1.7 Angstrom Resolution Crystal Structure of Putative Phosphatase From Clostridium Difficile, PDB code: 3sd7 was solved by G.Minasov, L.Shuvalova, I.Dubrovska, J.Winsor, L.Papazisi, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.65 / 1.70
Space group	I 41
Cell size a, b, c (Å), α, β, γ (°)	116.333, 116.333, 36.080, 90.00, 90.00, 90.00
R / Rfree (%)	16.7 / 19.3

The structure of 1.7 Angstrom Resolution Crystal Structure of Putative Phosphatase From Clostridium Difficile also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Sodium atom in the 1.7 Angstrom Resolution Crystal Structure of Putative Phosphatase From Clostridium Difficile (pdb code 3sd7). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the 1.7 Angstrom Resolution Crystal Structure of Putative Phosphatase From Clostridium Difficile, PDB code: 3sd7:

Sodium binding site 1 out of 1 in the 1.7 Angstrom Resolution Crystal Structure of Putative Phosphatase From Clostridium Difficile


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of 1.7 Angstrom Resolution Crystal Structure of Putative Phosphatase From Clostridium Difficile within 5.0Å range: probe atom residue distance (Å) B Occ A:Na217 b:22.6 occ:0.70 O A:HOH340 2.2 24.3 1.0 O A:ASP13 2.2 20.2 1.0 OD1 A:ASP168 2.2 23.0 1.0 O A:HOH343 2.2 25.2 1.0 O A:HOH341 2.4 21.0 1.0 CG A:ASP168 3.2 21.6 1.0 C A:ASP13 3.4 19.7 1.0 OD2 A:ASP168 3.5 20.1 1.0 CG A:ASP11 4.0 26.5 1.0 OD2 A:ASP11 4.1 31.7 1.0 CG A:ARG169 4.1 20.6 1.0 OD1 A:ASP11 4.1 22.3 1.0 OG1 A:THR15 4.2 19.8 1.0 CA A:ASP13 4.3 20.4 1.0 O A:HOH258 4.3 32.2 1.0 OD2 A:ASP172 4.3 23.4 1.0 N A:GLY14 4.3 20.0 1.0 CB A:ASP13 4.3 20.6 1.0 CA A:GLY14 4.4 20.0 1.0 N A:ASP13 4.4 19.4 1.0 CB A:ASP11 4.5 20.7 1.0 O A:HOH342 4.5 26.6 1.0 O A:HOH237 4.5 19.7 1.0 CB A:ASP168 4.6 18.7 1.0 O A:HOH339 4.7 25.1 1.0 N A:ASP168 4.7 17.9 1.0 C A:GLY14 4.8 19.1 1.0 O A:HOH259 4.8 28.8 1.0 N A:THR15 4.9 18.9 1.0 O A:HOH370 5.0 42.4 1.0

G.Minasov, L.Shuvalova, I.Dubrovska, J.Winsor, L.Papazisi, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). 1.7 Angstrom Resolution Crystal Structure of Putative Phosphatase From Clostridium Difficile. To Be Published.