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Sodium in PDB 3s9o: The Focal Adhesion Targeting (Fat) Domain of the Focal Adhesion Kinase Showing N-Terminal Interactions in Cis

Enzymatic activity of The Focal Adhesion Targeting (Fat) Domain of the Focal Adhesion Kinase Showing N-Terminal Interactions in Cis

All present enzymatic activity of The Focal Adhesion Targeting (Fat) Domain of the Focal Adhesion Kinase Showing N-Terminal Interactions in Cis:
2.7.10.2;

Protein crystallography data

The structure of The Focal Adhesion Targeting (Fat) Domain of the Focal Adhesion Kinase Showing N-Terminal Interactions in Cis, PDB code: 3s9o was solved by S.T.Arold, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.43 / 2.60
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 89.918, 223.983, 98.015, 90.00, 90.00, 90.00
R / Rfree (%) 23.3 / 28.7

Other elements in 3s9o:

The structure of The Focal Adhesion Targeting (Fat) Domain of the Focal Adhesion Kinase Showing N-Terminal Interactions in Cis also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the The Focal Adhesion Targeting (Fat) Domain of the Focal Adhesion Kinase Showing N-Terminal Interactions in Cis (pdb code 3s9o). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the The Focal Adhesion Targeting (Fat) Domain of the Focal Adhesion Kinase Showing N-Terminal Interactions in Cis, PDB code: 3s9o:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 3s9o

Go back to Sodium Binding Sites List in 3s9o
Sodium binding site 1 out of 2 in the The Focal Adhesion Targeting (Fat) Domain of the Focal Adhesion Kinase Showing N-Terminal Interactions in Cis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Focal Adhesion Targeting (Fat) Domain of the Focal Adhesion Kinase Showing N-Terminal Interactions in Cis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na34

b:76.8
occ:1.00
 N A:ALA977 3.0 75.3 1.0
CA A:PRO976 3.1 71.8 1.0
C A:PRO976 3.5 72.8 1.0
CB A:PRO976 3.8 72.2 1.0
CA A:ALA977 4.2 76.1 1.0
CB A:ALA977 4.2 78.7 1.0
N A:PRO976 4.2 69.1 1.0
O A:LEU975 4.4 67.8 1.0
C A:LEU975 4.6 67.4 1.0
O A:PRO976 4.7 72.0 1.0
CG A:PRO976 4.8 70.7 1.0

Sodium binding site 2 out of 2 in 3s9o

Go back to Sodium Binding Sites List in 3s9o
Sodium binding site 2 out of 2 in the The Focal Adhesion Targeting (Fat) Domain of the Focal Adhesion Kinase Showing N-Terminal Interactions in Cis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of The Focal Adhesion Targeting (Fat) Domain of the Focal Adhesion Kinase Showing N-Terminal Interactions in Cis within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Na35

b:16.2
occ:0.50
 N C:ALA977 3.5 73.9 1.0
O C:HOH22 3.8 27.3 1.0
O C:LEU975 3.9 70.8 1.0
C C:PRO976 4.1 71.3 1.0
CB C:ALA977 4.2 78.7 1.0
CA C:PRO976 4.2 70.5 1.0
CA C:ALA977 4.2 75.1 1.0
C C:LEU975 4.7 68.7 1.0
O C:PRO973 4.7 76.5 1.0
N C:PRO976 4.9 68.3 1.0
O C:PRO976 5.0 69.3 1.0

Reference:

G.Kadare, N.Gervasi, K.Brami-Cherrier, H.Blockus, S.El Messari, S.T.Arold, J.A.Girault. Conformational Dynamics of the Focal Adhesion Targeting Domain Control Specific Functions of Focal Adhesion Kinase in Cells. J.Biol.Chem. V. 290 478 2015.
ISSN: ISSN 0021-9258
PubMed: 25391654
DOI: 10.1074/JBC.M114.593632
Page generated: Mon Oct 7 12:55:16 2024

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