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Sodium in PDB 3s6d: Crystal Structure of A Putative Triosephosphate Isomerase From Coccidioides Immitis

Enzymatic activity of Crystal Structure of A Putative Triosephosphate Isomerase From Coccidioides Immitis

All present enzymatic activity of Crystal Structure of A Putative Triosephosphate Isomerase From Coccidioides Immitis:
5.3.1.1;

Protein crystallography data

The structure of Crystal Structure of A Putative Triosephosphate Isomerase From Coccidioides Immitis, PDB code: 3s6d was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.20
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 130.070, 42.460, 50.210, 90.00, 90.00, 90.00
R / Rfree (%) 19 / 22.7

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of A Putative Triosephosphate Isomerase From Coccidioides Immitis (pdb code 3s6d). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A Putative Triosephosphate Isomerase From Coccidioides Immitis, PDB code: 3s6d:

Sodium binding site 1 out of 1 in 3s6d

Go back to Sodium Binding Sites List in 3s6d
Sodium binding site 1 out of 1 in the Crystal Structure of A Putative Triosephosphate Isomerase From Coccidioides Immitis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Putative Triosephosphate Isomerase From Coccidioides Immitis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na290

b:7.3
occ:0.50
O A:HOH360 2.4 11.5 1.0
O A:HOH359 2.5 8.4 1.0
OE2 A:GLU109 3.1 18.5 1.0
NH2 A:ARG130 3.8 15.5 1.0
CD A:GLU109 3.9 14.0 1.0
O A:HOH352 3.9 8.8 1.0
OE1 A:GLU109 3.9 16.4 1.0
O A:HOH296 3.9 7.9 1.0
O A:GLY108 4.0 11.2 1.0
OD2 A:ASP97 4.1 18.2 1.0
CZ A:ARG130 4.7 15.5 1.0
NH1 A:ARG130 4.9 10.8 1.0
C A:GLY108 5.0 10.6 1.0

Reference:

T.E.Edwards, J.Abendroth, Seattle Structural Genomics Center For Infectious Disease(Ssgcid). Crystal Structure of A Putative Triosephosphate Isomerase From Coccidioides Immitis To Be Published.
Page generated: Mon Oct 7 12:54:35 2024

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