Sodium in PDB 3s30: Crystal Structure of A Putative Glycoside Hydrolase (BVU_0247) From Bacteroides Vulgatus Atcc 8482 at 2.46 A Resolution

The structure of Crystal Structure of A Putative Glycoside Hydrolase (BVU_0247) From Bacteroides Vulgatus Atcc 8482 at 2.46 A Resolution, PDB code: 3s30 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.66 / 2.46
Space group	P 65
Cell size a, b, c (Å), α, β, γ (°)	146.745, 146.745, 91.510, 90.00, 90.00, 120.00
R / Rfree (%)	23.3 / 25.1

The binding sites of Sodium atom in the Crystal Structure of A Putative Glycoside Hydrolase (BVU_0247) From Bacteroides Vulgatus Atcc 8482 at 2.46 A Resolution (pdb code 3s30). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of A Putative Glycoside Hydrolase (BVU_0247) From Bacteroides Vulgatus Atcc 8482 at 2.46 A Resolution, PDB code: 3s30:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of A Putative Glycoside Hydrolase (BVU_0247) From Bacteroides Vulgatus Atcc 8482 at 2.46 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Putative Glycoside Hydrolase (BVU_0247) From Bacteroides Vulgatus Atcc 8482 at 2.46 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Na383 b:47.7 occ:1.00 O A:ASN133 2.3 54.0 1.0 O A:ASN193 2.4 54.9 1.0 OD1 A:ASP371 2.5 48.7 1.0 OE2 A:GLU135 2.9 68.8 1.0 CG A:ASP371 3.4 54.2 1.0 C A:ASN133 3.4 52.2 1.0 OD2 A:ASP371 3.6 53.3 1.0 C A:ASN193 3.6 55.7 1.0 CD A:GLU135 3.8 68.2 1.0 CA A:ASN133 3.9 51.9 1.0 N A:GLY192 4.0 70.0 1.0 CB A:ASN133 4.2 53.0 1.0 N A:ASN193 4.2 59.7 1.0 OD1 A:ASP372 4.3 65.8 1.0 C A:GLY192 4.5 63.1 1.0 OE1 A:GLU135 4.5 63.9 1.0 CG A:GLU135 4.5 62.7 1.0 N A:CYS194 4.5 54.2 1.0 CA A:ASN193 4.5 57.3 1.0 CA A:CYS194 4.6 52.5 1.0 N A:PHE134 4.6 52.5 1.0 CB A:THR191 4.6 74.9 1.0 CA A:GLY192 4.6 66.6 1.0 N A:ASP372 4.7 55.8 1.0 CB A:ASP371 4.8 54.0 1.0 C A:PHE134 4.8 52.4 1.0 O A:HOH533 4.8 71.4 1.0 CB A:PHE134 4.8 52.4 1.0 N A:THR191 4.9 72.6 1.0 CD2 A:PHE134 4.9 58.6 1.0 OD1 A:ASN133 4.9 55.6 1.0 CA A:PHE134 5.0 51.9 1.0 CG A:ASP372 5.0 61.9 1.0 O A:PHE134 5.0 52.5 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of A Putative Glycoside Hydrolase (BVU_0247) From Bacteroides Vulgatus Atcc 8482 at 2.46 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of A Putative Glycoside Hydrolase (BVU_0247) From Bacteroides Vulgatus Atcc 8482 at 2.46 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Na384 b:56.5 occ:1.00 O B:ASN133 2.3 50.8 1.0 O B:ASN193 2.4 56.2 1.0 OD1 B:ASP371 2.4 51.4 1.0 OE2 B:GLU135 2.9 66.4 1.0 CG B:ASP371 3.3 55.8 1.0 C B:ASN133 3.4 49.0 1.0 OD2 B:ASP371 3.4 56.5 1.0 C B:ASN193 3.6 56.9 1.0 CD B:GLU135 3.8 64.7 1.0 CA B:ASN133 3.9 50.0 1.0 N B:GLY192 4.1 72.3 1.0 CB B:ASN133 4.1 49.6 1.0 N B:ASN193 4.2 61.8 1.0 O B:HOH549 4.2 76.0 1.0 CA B:ASN193 4.5 59.4 1.0 CG B:GLU135 4.5 60.0 1.0 OE1 B:GLU135 4.5 60.3 1.0 C B:GLY192 4.5 65.5 1.0 N B:PHE134 4.5 48.6 1.0 N B:CYS194 4.5 55.0 1.0 CA B:CYS194 4.5 54.2 1.0 OD1 B:ASP372 4.5 67.4 1.0 CB B:THR191 4.6 76.1 1.0 CA B:GLY192 4.7 69.2 1.0 CB B:ASP371 4.7 55.3 1.0 C B:PHE134 4.7 50.5 1.0 N B:ASP372 4.8 58.0 1.0 CB B:PHE134 4.9 49.5 1.0 O B:PHE134 4.9 50.4 1.0 N B:THR191 4.9 73.5 1.0 CA B:PHE134 4.9 49.7 1.0 OD1 B:ASN133 4.9 58.0 1.0 N B:GLU135 4.9 52.3 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.