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Sodium in PDB 3s18: Crystal Structure of A Plant Albumin From Cicer Arietinum Showing Hemagglutination

Protein crystallography data

The structure of Crystal Structure of A Plant Albumin From Cicer Arietinum Showing Hemagglutination, PDB code: 3s18 was solved by U.Sharma, C.G.Suresh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.30 / 2.20
Space group P 3
Cell size a, b, c (Å), α, β, γ (°) 81.917, 81.917, 69.591, 90.00, 90.00, 120.00
R / Rfree (%) 17.7 / 22.3

Other elements in 3s18:

The structure of Crystal Structure of A Plant Albumin From Cicer Arietinum Showing Hemagglutination also contains other interesting chemical elements:

Iodine (I) 2 atoms
Calcium (Ca) 2 atoms
Chlorine (Cl) 3 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of A Plant Albumin From Cicer Arietinum Showing Hemagglutination (pdb code 3s18). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A Plant Albumin From Cicer Arietinum Showing Hemagglutination, PDB code: 3s18:

Sodium binding site 1 out of 1 in 3s18

Go back to Sodium Binding Sites List in 3s18
Sodium binding site 1 out of 1 in the Crystal Structure of A Plant Albumin From Cicer Arietinum Showing Hemagglutination


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Plant Albumin From Cicer Arietinum Showing Hemagglutination within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na233

b:30.6
occ:1.00
OD1 A:ASP65 2.8 23.4 1.0
N A:ILE120 2.9 25.5 1.0
CL A:CL231 2.9 60.2 1.0
O A:GLU80 3.0 22.4 1.0
O A:ILE120 3.3 23.4 1.0
CA A:GLY119 3.4 27.8 1.0
C A:GLY119 3.6 26.7 1.0
CB A:PHE78 3.6 20.6 1.0
CG A:ASP65 3.6 23.2 1.0
N A:GLU80 3.7 22.0 1.0
OD2 A:ASP65 3.8 24.5 1.0
CA A:ILE120 3.9 24.1 1.0
C A:GLU80 3.9 23.2 1.0
C A:ILE120 4.0 24.0 1.0
CA A:GLU80 4.0 23.3 1.0
C A:TYR79 4.3 21.8 1.0
CB A:ILE120 4.3 23.4 1.0
CG A:PHE78 4.3 20.7 1.0
N A:TYR79 4.4 20.8 1.0
CB A:CYS66 4.4 22.7 1.0
CD1 A:ILE104 4.4 22.9 1.0
CD1 A:PHE78 4.4 20.6 1.0
CA A:TYR79 4.5 21.4 1.0
C A:PHE78 4.6 21.0 1.0
CG1 A:ILE120 4.7 24.8 1.0
N A:GLY119 4.7 29.4 1.0
CA A:PHE78 4.8 20.8 1.0
O A:HOH248 4.8 25.7 1.0
O A:GLY119 4.8 26.7 1.0
CB A:ASP65 5.0 23.8 1.0

Reference:

U.Sharma, U.V.Katre, C.G.Suresh. Crystal Structure of A Plant Albumin From Cicer Arietinum (Chickpea) Possessing Hemopexin Fold and Hemagglutination Activity Planta 2015.
ISSN: ISSN 0032-0935
PubMed: 25559942
DOI: 10.1007/S00425-014-2236-6
Page generated: Tue Dec 15 06:24:17 2020

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