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Sodium in PDB 3s0t: Crystal Structure of the Cofa Type IV Pilin Subunit From Enterotoxigenic E. Coli

Protein crystallography data

The structure of Crystal Structure of the Cofa Type IV Pilin Subunit From Enterotoxigenic E. Coli, PDB code: 3s0t was solved by S.Kolappan, L.Craig, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 1.26
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 29.500, 34.150, 64.230, 95.75, 97.38, 94.00
R / Rfree (%) 13.9 / 18.1

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of the Cofa Type IV Pilin Subunit From Enterotoxigenic E. Coli (pdb code 3s0t). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Cofa Type IV Pilin Subunit From Enterotoxigenic E. Coli, PDB code: 3s0t:

Sodium binding site 1 out of 1 in 3s0t

Go back to Sodium Binding Sites List in 3s0t
Sodium binding site 1 out of 1 in the Crystal Structure of the Cofa Type IV Pilin Subunit From Enterotoxigenic E. Coli


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Cofa Type IV Pilin Subunit From Enterotoxigenic E. Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na3

b:13.6
occ:1.00
OD1 B:ASP49 2.3 19.0 0.5
CG B:ASP49 2.6 14.8 0.5
O B:HOH375 2.7 36.3 1.0
O B:HOH317 2.8 31.4 1.0
O B:VAL45 2.8 11.5 1.0
OD2 B:ASP49 2.9 20.1 0.5
CG1 B:VAL45 3.3 16.1 1.0
N B:ASP49 3.6 12.2 1.0
C B:VAL45 3.6 11.3 1.0
CA B:VAL45 3.7 12.2 1.0
CB B:ASP49 3.7 15.4 1.0
CB B:LYS48 3.9 10.8 1.0
CB B:VAL45 4.0 12.8 1.0
CA B:ASP49 4.0 13.6 1.0
C B:LYS48 4.2 10.8 1.0
CA B:LYS48 4.6 9.2 1.0
CG2 B:VAL45 4.6 15.8 1.0
N B:ALA46 4.9 10.3 1.0
N B:LYS48 4.9 9.1 1.0
O B:LYS48 5.0 11.9 1.0

Reference:

S.Kolappan, J.Roos, A.S.Yuen, O.M.Pierce, L.Craig. Structural Characterization of Cfa/III and Longus Type Ivb Pili From Enterotoxigenic Escherichia Coli. J.Bacteriol. V. 194 2725 2012.
ISSN: ISSN 0021-9193
PubMed: 22447901
DOI: 10.1128/JB.00282-12
Page generated: Tue Dec 15 06:24:17 2020

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