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Sodium in PDB 3ry9: Crystal Structure of the Resurrected Ancestral Glucocorticoid Receptor 1 in Complex with Doc

Protein crystallography data

The structure of Crystal Structure of the Resurrected Ancestral Glucocorticoid Receptor 1 in Complex with Doc, PDB code: 3ry9 was solved by E.A.Ortlund, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 96.67 / 1.95
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 139.421, 49.144, 100.369, 90.00, 105.82, 90.00
R / Rfree (%) 18.1 / 21.6

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of the Resurrected Ancestral Glucocorticoid Receptor 1 in Complex with Doc (pdb code 3ry9). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Resurrected Ancestral Glucocorticoid Receptor 1 in Complex with Doc, PDB code: 3ry9:

Sodium binding site 1 out of 1 in 3ry9

Go back to Sodium Binding Sites List in 3ry9
Sodium binding site 1 out of 1 in the Crystal Structure of the Resurrected Ancestral Glucocorticoid Receptor 1 in Complex with Doc


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Resurrected Ancestral Glucocorticoid Receptor 1 in Complex with Doc within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na248

b:21.3
occ:1.00
O B:HOH332 2.3 21.9 1.0
O B:HOH344 2.4 22.4 1.0
O B:HOH343 2.4 15.4 1.0
O B:HOH341 2.6 17.6 1.0
O B:HOH342 2.6 18.6 1.0
O B:HOH386 3.6 17.8 1.0
O B:GLU6 3.9 17.2 1.0
OD1 B:ASP11 4.0 23.2 1.0
O B:GLU9 4.1 17.9 1.0
OE2 B:GLU6 4.1 21.7 1.0
O B:HOH331 4.6 34.4 1.0
CD B:GLU6 4.9 20.5 1.0
OH B:TYR129 5.0 17.1 1.0

Reference:

S.M.Carroll, E.A.Ortlund, J.W.Thornton. Mechanisms For the Evolution of A Derived Function in the Ancestral Glucocorticoid Receptor. Plos Genet V. 7 E1002 2011.
PubMed: 21698144
DOI: 10.1371/JOURNAL.PGEN.1002117
Page generated: Tue Dec 15 06:24:17 2020

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