Atomistry » Sodium » PDB 3rnx-3si4 » 3rwg
Atomistry »
  Sodium »
    PDB 3rnx-3si4 »
      3rwg »

Sodium in PDB 3rwg: Rhesus Macaque Mhc Class I Molecule Mamu-B*17-MW9

Protein crystallography data

The structure of Rhesus Macaque Mhc Class I Molecule Mamu-B*17-MW9, PDB code: 3rwg was solved by Y.Wu, F.Gao, J.Liu, J.X.Qi, D.A.Price, G.F.Gao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.10
Space group P 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 68.018, 44.419, 79.517, 90.00, 96.33, 90.00
R / Rfree (%) 19 / 23.7

Sodium Binding Sites:

The binding sites of Sodium atom in the Rhesus Macaque Mhc Class I Molecule Mamu-B*17-MW9 (pdb code 3rwg). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Rhesus Macaque Mhc Class I Molecule Mamu-B*17-MW9, PDB code: 3rwg:

Sodium binding site 1 out of 1 in 3rwg

Go back to Sodium Binding Sites List in 3rwg
Sodium binding site 1 out of 1 in the Rhesus Macaque Mhc Class I Molecule Mamu-B*17-MW9


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Rhesus Macaque Mhc Class I Molecule Mamu-B*17-MW9 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na278

b:44.4
occ:1.00
O A:HOH320 2.3 31.7 1.0
O16 A:XPE277 2.4 56.1 1.0
O4 A:XPE277 2.5 41.5 1.0
O7 A:XPE277 2.7 44.0 1.0
O13 A:XPE277 2.8 49.0 1.0
O10 A:XPE277 2.8 45.7 1.0
O1 A:XPE277 3.3 42.9 1.0
C17 A:XPE277 3.3 56.9 1.0
C15 A:XPE277 3.3 53.6 1.0
C2 A:XPE277 3.5 40.7 1.0
C9 A:XPE277 3.5 44.9 1.0
C3 A:XPE277 3.5 41.6 1.0
C14 A:XPE277 3.6 52.0 1.0
C6 A:XPE277 3.6 42.3 1.0
C5 A:XPE277 3.6 42.1 1.0
C11 A:XPE277 3.6 47.0 1.0
C8 A:XPE277 3.6 44.2 1.0
C12 A:XPE277 3.7 48.2 1.0
C18 A:XPE277 3.7 56.9 1.0
OE1 A:GLU166 4.3 40.1 0.5
OE1 A:GLU166 4.6 40.1 0.5

Reference:

Y.Wu, F.Gao, J.Liu, J.X.Qi, E.Gostick, D.A.Price, G.F.Gao. Structural Basis of Diverse Peptide Accommodation By the Rhesus Macaque Mhc Class I Molecule Mamu-B*17: Insights Into Immune Protection From Simian Immunodeficiency Virus J.Immunol. V. 187 6382 2011.
ISSN: ISSN 0022-1767
PubMed: 22084443
DOI: 10.4049/JIMMUNOL.1101726
Page generated: Tue Dec 15 06:24:14 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy