Sodium in PDB 3rw8: Crystal Structure of Lysozyme in 40% Ethanol

All present enzymatic activity of Crystal Structure of Lysozyme in 40% Ethanol:
3.2.1.17;

The structure of Crystal Structure of Lysozyme in 40% Ethanol, PDB code: 3rw8 was solved by P.Sharma, A.K.Solanki, Ashish, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.98 / 1.85
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	78.216, 78.216, 36.886, 90.00, 90.00, 90.00
R / Rfree (%)	19 / 22.7

The structure of Crystal Structure of Lysozyme in 40% Ethanol also contains other interesting chemical elements:

Chlorine

(Cl)

9 atoms

The binding sites of Sodium atom in the Crystal Structure of Lysozyme in 40% Ethanol (pdb code 3rw8). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 3 binding sites of Sodium where determined in the Crystal Structure of Lysozyme in 40% Ethanol, PDB code: 3rw8:
Jump to Sodium binding site number: 1; 2; 3;

Sodium binding site 1 out of 3 in the Crystal Structure of Lysozyme in 40% Ethanol


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Lysozyme in 40% Ethanol within 5.0Å range: probe atom residue distance (Å) B Occ A:Na153 b:35.6 occ:1.00 O A:ARG21 3.7 28.7 1.0 CA A:GLY22 3.8 30.4 1.0 C A:ARG21 4.3 30.6 1.0 N A:GLY22 4.3 29.4 1.0 C A:GLY22 4.7 30.2 1.0 O A:GLY22 4.8 26.5 1.0 C2 A:EOH130 4.8 27.9 1.0

Sodium binding site 2 out of 3 in the Crystal Structure of Lysozyme in 40% Ethanol


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Lysozyme in 40% Ethanol within 5.0Å range: probe atom residue distance (Å) B Occ A:Na154 b:30.4 occ:1.00 O A:CYS64 2.5 23.9 1.0 O A:SER60 2.5 23.8 1.0 O A:HOH215 2.6 26.9 1.0 O A:HOH163 2.6 24.4 1.0 O A:ARG73 2.7 27.1 1.0 OG A:SER72 2.8 27.6 1.0 CB A:SER72 3.3 28.0 1.0 C A:CYS64 3.5 21.4 1.0 C A:SER60 3.6 24.0 1.0 C A:ARG73 3.6 29.4 1.0 CA A:ASN65 3.9 22.4 1.0 N A:ARG73 4.1 28.2 1.0 CA A:SER60 4.1 23.0 1.0 N A:ASN65 4.1 22.6 1.0 CB A:SER60 4.2 21.3 1.0 C A:SER72 4.3 33.0 1.0 N A:CYS64 4.4 21.1 1.0 CA A:ARG73 4.4 27.5 1.0 CA A:SER72 4.5 31.2 1.0 N A:ASN74 4.5 27.0 1.0 CA A:ASN74 4.6 27.5 1.0 ND2 A:ASN65 4.6 21.0 1.0 CA A:CYS64 4.6 22.3 1.0 N A:ASP66 4.6 21.1 1.0 CL A:CL145 4.6 29.0 1.0 CB A:THR69 4.6 26.4 1.0 O A:ARG61 4.7 27.9 1.0 O A:HOH226 4.7 35.9 1.0 CB A:ASN74 4.7 27.1 1.0 C A:ARG61 4.7 29.4 1.0 N A:ARG61 4.7 24.5 1.0 CB A:ASN65 4.8 24.8 1.0 O A:SER72 4.8 31.8 1.0 C A:ASN65 4.8 20.5 1.0 OG A:SER60 5.0 20.6 1.0 N A:TRP62 5.0 28.5 1.0 O A:THR69 5.0 23.9 1.0

Sodium binding site 3 out of 3 in the Crystal Structure of Lysozyme in 40% Ethanol


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Crystal Structure of Lysozyme in 40% Ethanol within 5.0Å range: probe atom residue distance (Å) B Occ A:Na155 b:27.4 occ:1.00 O A:GLN41 2.9 23.3 1.0 OG1 A:THR43 2.9 24.9 1.0 N A:THR43 3.1 20.7 1.0 CB A:THR43 3.7 23.2 1.0 CG2 A:THR43 3.7 22.8 1.0 C A:ALA42 3.8 23.3 1.0 CA A:THR43 3.9 21.4 1.0 CA A:ALA42 3.9 23.5 1.0 C A:GLN41 3.9 22.1 1.0 O A:THR43 4.1 25.5 1.0 N A:ALA42 4.4 18.2 1.0 C A:THR43 4.5 26.1 1.0 O A:ALA42 4.7 19.5 1.0

P.Sharma, A.K.Solanki, Ashish. Crystal Structure of Lysozyme in 40% Ethanol To Be Published.