Sodium in PDB 3ru7: Specific Recognition of N-Acetylated Substrates and Domain Flexibility in Wbgu: A Udp-Galnac 4-Epimerase

The structure of Specific Recognition of N-Acetylated Substrates and Domain Flexibility in Wbgu: A Udp-Galnac 4-Epimerase, PDB code: 3ru7 was solved by V.S.Bhatt, W.Guan, P.G.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	74.80 / 2.60
Space group	P 32
Cell size a, b, c (Å), α, β, γ (°)	77.730, 77.730, 224.540, 90.00, 90.00, 120.00
R / Rfree (%)	21.7 / 27

The binding sites of Sodium atom in the Specific Recognition of N-Acetylated Substrates and Domain Flexibility in Wbgu: A Udp-Galnac 4-Epimerase (pdb code 3ru7). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 4 binding sites of Sodium where determined in the Specific Recognition of N-Acetylated Substrates and Domain Flexibility in Wbgu: A Udp-Galnac 4-Epimerase, PDB code: 3ru7:
Jump to Sodium binding site number: 1; 2; 3; 4;

Sodium binding site 1 out of 4 in the Specific Recognition of N-Acetylated Substrates and Domain Flexibility in Wbgu: A Udp-Galnac 4-Epimerase


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Specific Recognition of N-Acetylated Substrates and Domain Flexibility in Wbgu: A Udp-Galnac 4-Epimerase within 5.0Å range: probe atom residue distance (Å) B Occ A:Na351 b:53.3 occ:1.00 NE2 A:GLN11 3.7 34.9 1.0 OE1 A:GLN11 3.7 32.6 1.0 O A:LEU251 3.8 34.1 1.0 CD A:GLN11 4.1 33.0 1.0 CD2 A:LEU251 4.2 35.4 1.0 CB A:LEU251 4.4 33.3 1.0 CG A:LEU251 4.7 34.0 1.0 C A:LEU251 4.8 33.3 1.0 CA A:LEU251 5.0 32.9 1.0

Sodium binding site 2 out of 4 in the Specific Recognition of N-Acetylated Substrates and Domain Flexibility in Wbgu: A Udp-Galnac 4-Epimerase


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Specific Recognition of N-Acetylated Substrates and Domain Flexibility in Wbgu: A Udp-Galnac 4-Epimerase within 5.0Å range: probe atom residue distance (Å) B Occ A:Na352 b:54.0 occ:1.00 O A:GLN133 4.5 34.2 1.0 OD1 A:ASP93 4.7 26.2 1.0

Sodium binding site 3 out of 4 in the Specific Recognition of N-Acetylated Substrates and Domain Flexibility in Wbgu: A Udp-Galnac 4-Epimerase


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Specific Recognition of N-Acetylated Substrates and Domain Flexibility in Wbgu: A Udp-Galnac 4-Epimerase within 5.0Å range: probe atom residue distance (Å) B Occ B:Na351 b:42.3 occ:1.00 N B:LYS187 4.0 25.9 1.0 O B:LYS187 4.3 24.7 1.0 O B:GLN135 4.3 30.2 1.0 O B:GLY185 4.5 28.5 1.0 CD1 B:PHE186 4.6 26.3 1.0 O B:VAL134 4.7 30.8 1.0 CA B:PHE186 4.7 26.4 1.0 CA B:LYS187 4.8 25.4 1.0 CB B:LYS187 4.8 26.1 1.0 C B:PHE186 4.8 25.9 1.0 NZ B:LYS257 4.8 21.9 1.0 CE1 B:PHE186 4.8 25.5 1.0 OD1 B:ASP254 4.9 42.4 1.0 C B:GLN135 5.0 30.0 1.0 C B:LYS187 5.0 24.6 1.0

Sodium binding site 4 out of 4 in the Specific Recognition of N-Acetylated Substrates and Domain Flexibility in Wbgu: A Udp-Galnac 4-Epimerase


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 4 of Specific Recognition of N-Acetylated Substrates and Domain Flexibility in Wbgu: A Udp-Galnac 4-Epimerase within 5.0Å range: probe atom residue distance (Å) B Occ C:Na352 b:53.2 occ:1.00 N C:LYS187 3.6 34.0 1.0 O C:LYS187 3.6 32.3 1.0 NZ C:LYS257 4.2 36.2 1.0 CD1 C:PHE186 4.2 34.4 1.0 O C:GLN135 4.2 38.7 1.0 CA C:LYS187 4.3 33.1 1.0 C C:LYS187 4.4 32.2 1.0 CB C:LYS187 4.4 33.8 1.0 C C:PHE186 4.5 34.1 1.0 CE1 C:PHE186 4.5 33.4 1.0 CA C:PHE186 4.5 34.7 1.0 O C:VAL134 4.5 39.6 1.0 CD C:LYS257 4.6 35.8 1.0 O C:GLY185 4.7 37.2 1.0 C C:GLN135 4.9 38.5 1.0 CG C:PHE186 4.9 34.0 1.0

V.S.Bhatt, W.Guan, P.G Wang. Specific Recognition of N-Acetylated Substrates and Domain Flexibility in Wbgu: A Udp-Galnac 4-Epimerase To Be Published.