Sodium in PDB 3rga: Crystal Structure of Epoxide Hydrolase For Polyether Lasalocid A Biosynthesis

The structure of Crystal Structure of Epoxide Hydrolase For Polyether Lasalocid A Biosynthesis, PDB code: 3rga was solved by K.Hotta, I.I.Mathews, X.Chen, C.-Y.Kim, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.45 / 1.59
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	117.850, 47.480, 62.330, 90.00, 120.11, 90.00
R / Rfree (%)	17.3 / 19.2

The binding sites of Sodium atom in the Crystal Structure of Epoxide Hydrolase For Polyether Lasalocid A Biosynthesis (pdb code 3rga). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Epoxide Hydrolase For Polyether Lasalocid A Biosynthesis, PDB code: 3rga:

Sodium binding site 1 out of 1 in the Crystal Structure of Epoxide Hydrolase For Polyether Lasalocid A Biosynthesis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Epoxide Hydrolase For Polyether Lasalocid A Biosynthesis within 5.0Å range: probe atom residue distance (Å) B Occ A:Na312 b:14.7 occ:1.00 O A:THR129 2.1 20.3 1.0 O A:VAL123 2.3 15.3 1.0 O A:SER126 2.3 15.0 1.0 O A:HOH447 2.4 20.5 1.0 O A:HOH452 2.4 34.7 1.0 C A:THR129 3.3 21.3 1.0 C A:VAL123 3.4 15.2 1.0 C A:SER126 3.4 15.1 1.0 CG2 A:THR129 3.5 20.7 1.0 N A:SER126 3.9 13.3 1.0 CA A:THR124 3.9 15.3 1.0 N A:THR124 4.1 14.9 1.0 CA A:SER126 4.2 14.0 1.0 CA A:THR129 4.2 21.6 1.0 N A:THR129 4.2 20.0 1.0 N A:ALA130 4.2 23.2 1.0 CA A:ALA130 4.3 24.2 1.0 C A:THR124 4.3 14.9 1.0 CB A:THR129 4.5 21.9 1.0 N A:SER127 4.5 15.1 1.0 CA A:VAL123 4.5 15.0 1.0 CB A:SER126 4.6 14.5 1.0 N A:ASP125 4.7 13.2 1.0 O A:THR124 4.7 16.6 1.0 CA A:SER127 4.8 16.8 1.0 C A:ALA130 4.9 25.2 1.0 CB A:VAL123 4.9 16.1 1.0

K.Hotta, X.Chen, R.S.Paton, A.Minami, H.Li, K.Swaminathan, I.I.Mathews, K.Watanabe, H.Oikawa, K.N.Houk, C.-Y.Kim. Enzymatic Catalysis of Anti-Baldwin Ring Closure in Polyether Biosynthesis Nature V. 483 355 2012.
ISSN: ISSN 0028-0836
PubMed: 22388816
DOI: 10.1038/NATURE10865