Sodium in PDB 3ray: Crystal Structure of Methyltransferase Domain of Human Pr Domain- Containing Protein 11

The structure of Crystal Structure of Methyltransferase Domain of Human Pr Domain- Containing Protein 11, PDB code: 3ray was solved by A.Dong, H.Zeng, P.Loppnau, J.R.Walker, C.Bountra, J.Weigelt, C.H.Arrowsmith, A.M.Edwards, J.Min, H.Wu, Structural Genomics Consortium(Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	27.13 / 1.73
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	31.154, 55.156, 106.283, 90.00, 90.00, 90.00
R / Rfree (%)	19.4 / 22.8

The structure of Crystal Structure of Methyltransferase Domain of Human Pr Domain- Containing Protein 11 also contains other interesting chemical elements:

Zinc	(Zn)	1 atom
Chlorine	(Cl)	1 atom

The binding sites of Sodium atom in the Crystal Structure of Methyltransferase Domain of Human Pr Domain- Containing Protein 11 (pdb code 3ray). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Methyltransferase Domain of Human Pr Domain- Containing Protein 11, PDB code: 3ray:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of Methyltransferase Domain of Human Pr Domain- Containing Protein 11


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Methyltransferase Domain of Human Pr Domain- Containing Protein 11 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1002 b:42.3 occ:1.00 O A:GLU90 2.7 44.1 1.0 O A:GLY72 2.8 40.8 1.0 O A:VAL88 3.0 43.1 1.0 O A:HOH306 3.2 56.3 1.0 CA A:GLY72 3.4 39.7 1.0 O A:HOH311 3.4 47.9 1.0 C A:GLY72 3.5 40.3 1.0 SG A:CYS87 3.5 37.6 1.0 C A:GLU90 3.7 46.6 1.0 CG1 A:ILE92 3.8 33.8 1.0 N A:GLU90 3.8 44.5 1.0 C A:VAL88 4.1 43.8 1.0 CA A:GLU90 4.2 45.8 1.0 CD1 A:ILE92 4.3 36.3 1.0 N A:VAL88 4.3 36.8 1.0 CB A:GLU90 4.4 48.3 1.0 C A:VAL91 4.7 41.3 1.0 O A:VAL91 4.8 38.8 1.0 N A:MET73 4.8 34.7 0.5 N A:ILE92 4.8 37.2 1.0 N A:MET73 4.8 33.8 0.5 N A:VAL91 4.8 42.8 1.0 N A:GLY72 4.8 41.0 1.0 CB A:CYS87 4.9 33.0 1.0 CA A:VAL88 4.9 39.5 1.0 O A:GLN71 5.0 38.2 1.0 C A:ASN89 5.0 48.8 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of Methyltransferase Domain of Human Pr Domain- Containing Protein 11


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Methyltransferase Domain of Human Pr Domain- Containing Protein 11 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1003 b:41.1 occ:1.00 O A:TYR142 2.8 32.3 1.0 O A:SER83 2.9 39.0 1.0 O A:HOH287 3.2 44.9 1.0 O A:HOH320 3.3 51.5 1.0 C A:TYR142 3.5 32.3 1.0 CG2 A:VAL144 3.8 34.5 1.0 C A:SER83 3.8 36.6 1.0 CA A:TYR142 3.9 29.4 1.0 O A:HOH358 4.3 56.1 1.0 CB A:TYR142 4.5 30.1 1.0 N A:VAL144 4.5 27.6 1.0 N A:SER83 4.6 37.8 1.0 CA A:SER83 4.6 35.6 1.0 C A:VAL143 4.6 32.1 1.0 N A:VAL143 4.6 28.7 1.0 O A:HOH304 4.6 52.2 1.0 CB A:SER83 4.7 40.4 1.0 N A:ASP84 4.7 33.0 1.0 O A:VAL143 4.7 30.2 1.0 O A:ARG141 4.7 30.1 1.0 CA A:VAL144 4.7 29.2 1.0 CA A:ASP84 4.9 32.4 1.0 CB A:VAL144 4.9 33.7 1.0

A.Dong, H.Zeng, P.Loppnau, J.R.Walker, C.Bountra, J.Weigelt, C.H.Arrowsmith, A.M.Edwards, J.Min, H.Wu, Structural Genomics Consortium (Sgc). Crystal Structure of Methyltransferase Domain of Human Pr Domain-Containing Protein 11 To Be Published.