Sodium in PDB 3rag: Crystal Structure of Uncharacterized Protein AACI_0196 From Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius Dsm 446

The structure of Crystal Structure of Uncharacterized Protein AACI_0196 From Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius Dsm 446, PDB code: 3rag was solved by R.Wu, J.Bedearn, A.Joachimiak, Midwest Center For Structural Genomics(Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.95 / 1.80
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	46.696, 85.889, 132.971, 90.00, 90.00, 90.00
R / Rfree (%)	19.3 / 21.5

The binding sites of Sodium atom in the Crystal Structure of Uncharacterized Protein AACI_0196 From Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius Dsm 446 (pdb code 3rag). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Uncharacterized Protein AACI_0196 From Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius Dsm 446, PDB code: 3rag:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of Uncharacterized Protein AACI_0196 From Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius Dsm 446


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Uncharacterized Protein AACI_0196 From Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius Dsm 446 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na240 b:39.3 occ:1.00 OD1 A:ASP15 2.4 27.0 1.0 O A:HOH256 2.5 36.6 1.0 OG A:SER143 2.6 34.4 1.0 OG A:SER141 2.6 29.9 1.0 O A:HOH293 2.9 65.9 1.0 CG A:ASP15 3.3 30.5 1.0 OD2 A:ASP15 3.6 29.1 1.0 O A:HOH263 3.7 40.4 1.0 CG2 A:THR209 3.7 20.2 1.0 CB A:SER141 3.8 28.4 1.0 CB A:SER143 3.9 35.2 1.0 O A:HOH319 3.9 40.1 1.0 OD2 A:ASP139 4.1 26.1 1.0 OE1 A:GLU51 4.2 60.7 1.0 O A:ASP15 4.3 27.1 1.0 OD1 A:ASP139 4.3 24.3 1.0 C A:ASP15 4.4 29.0 1.0 O A:HOH271 4.4 35.7 1.0 N A:GLY16 4.6 26.9 1.0 CB A:ASP15 4.6 25.4 1.0 CG A:ASP139 4.6 26.1 1.0 N A:SER143 4.6 29.6 1.0 CA A:SER143 4.7 31.4 1.0 CA A:ASP15 4.8 25.7 1.0 CG A:MSE144 4.9 25.9 1.0 N A:MSE144 4.9 28.4 1.0 C A:SER143 5.0 29.9 1.0 CA A:SER141 5.0 27.0 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of Uncharacterized Protein AACI_0196 From Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius Dsm 446


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Uncharacterized Protein AACI_0196 From Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius Dsm 446 within 5.0Å range: probe atom residue distance (Å) B Occ B:Na240 b:51.0 occ:1.00 OG B:SER141 2.6 45.2 1.0 OG B:SER143 2.6 47.6 1.0 O B:HOH372 2.6 42.0 1.0 OD1 B:ASP15 2.8 44.7 1.0 O B:HOH390 2.9 54.9 1.0 O B:HOH420 3.5 67.5 1.0 CG B:ASP15 3.7 40.7 1.0 CB B:SER141 3.7 44.2 1.0 CB B:SER143 3.7 51.3 1.0 OD2 B:ASP15 3.9 42.8 1.0 OG1 B:THR209 4.1 43.5 1.0 O B:HOH263 4.2 51.7 1.0 N B:SER143 4.2 46.4 1.0 CA B:GLY16 4.2 47.4 1.0 N B:GLY16 4.3 43.3 1.0 OD2 B:ASP139 4.3 37.3 1.0 CA B:SER143 4.4 49.3 1.0 C B:ASP15 4.4 44.7 1.0 OD1 B:ASP139 4.5 37.7 1.0 O B:ASP15 4.5 46.8 1.0 N B:MSE144 4.8 43.5 1.0 C B:SER143 4.8 46.9 1.0 CG B:ASP139 4.8 36.5 1.0 C B:SER141 4.8 50.5 1.0 CA B:SER141 4.9 47.1 1.0 CG B:MSE144 4.9 43.1 1.0 O B:HOH419 4.9 64.8 1.0 CB B:ASP15 5.0 38.4 1.0

R.Wu, J.Bedearn, A.Joachimiak. Crystal Structure of Uncharacterized Protein AACI_0196 From Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius Dsm 446 To Be Published.