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Sodium in PDB 3k55: Structure of Beta Hairpin Deletion Mutant of Beta Toxin From Staphylococcus Aureus

Enzymatic activity of Structure of Beta Hairpin Deletion Mutant of Beta Toxin From Staphylococcus Aureus

All present enzymatic activity of Structure of Beta Hairpin Deletion Mutant of Beta Toxin From Staphylococcus Aureus:
3.1.4.12;

Protein crystallography data

The structure of Structure of Beta Hairpin Deletion Mutant of Beta Toxin From Staphylococcus Aureus, PDB code: 3k55 was solved by A.C.Kruse, M.Huseby, K.Shi, J.Digre, D.H.Ohlendorf, C.A.Earhart, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.31 / 3.35
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 151.377, 134.473, 156.990, 90.00, 116.89, 90.00
R / Rfree (%) 24.1 / 28.1

Other elements in 3k55:

The structure of Structure of Beta Hairpin Deletion Mutant of Beta Toxin From Staphylococcus Aureus also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of Beta Hairpin Deletion Mutant of Beta Toxin From Staphylococcus Aureus (pdb code 3k55). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Beta Hairpin Deletion Mutant of Beta Toxin From Staphylococcus Aureus, PDB code: 3k55:

Sodium binding site 1 out of 1 in 3k55

Go back to Sodium Binding Sites List in 3k55
Sodium binding site 1 out of 1 in the Structure of Beta Hairpin Deletion Mutant of Beta Toxin From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Beta Hairpin Deletion Mutant of Beta Toxin From Staphylococcus Aureus within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Na287

b:38.7
occ:1.00
OD2 C:ASP61 3.5 54.5 1.0
CB A:SER81 3.9 98.8 1.0
OG A:SER83 4.0 73.4 1.0
NH1 C:ARG80 4.1 63.5 1.0
OG A:SER81 4.3 99.1 1.0
CD1 C:LEU64 4.6 40.2 1.0
CG C:ASP61 4.7 54.8 1.0

Reference:

A.C.Kruse, M.J.Huseby, K.Shi, J.Digre, D.H.Ohlendorf, C.A.Earhart. Structure of A Mutant Beta Toxin From Staphylococcus Aureus Reveals Domain Swapping and Conformational Flexibility Acta Crystallogr.,Sect.F V. 67 438 2011.
ISSN: ESSN 1744-3091
PubMed: 21505235
DOI: 10.1107/S1744309111005239
Page generated: Tue Dec 15 06:16:03 2020

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