Sodium in PDB 3k0g: Crystal Structure of Cng Mimicking Nak Mutant, Nak-Etpp, Na+ Complex

The structure of Crystal Structure of Cng Mimicking Nak Mutant, Nak-Etpp, Na+ Complex, PDB code: 3k0g was solved by Y.Jiang, M.G.Derebe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	N/A / 1.95
Space group	I 4
Cell size a, b, c (Å), α, β, γ (°)	67.570, 67.570, 89.539, 90.00, 90.00, 90.00
R / Rfree (%)	20.4 / 22.8

The binding sites of Sodium atom in the Crystal Structure of Cng Mimicking Nak Mutant, Nak-Etpp, Na+ Complex (pdb code 3k0g). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 7 binding sites of Sodium where determined in the Crystal Structure of Cng Mimicking Nak Mutant, Nak-Etpp, Na+ Complex, PDB code: 3k0g:
Jump to Sodium binding site number: 1; 2; 3; 4; 5; 6; 7;

Sodium binding site 1 out of 7 in the Crystal Structure of Cng Mimicking Nak Mutant, Nak-Etpp, Na+ Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Cng Mimicking Nak Mutant, Nak-Etpp, Na+ Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Na4 b:32.4 occ:0.25 OG1 A:THR63 2.5 21.6 1.0 O A:HOH114 2.6 34.9 0.2 CB A:THR63 3.4 27.2 1.0 O A:THR63 4.2 23.3 1.0 CG2 A:THR63 4.2 28.8 1.0 C A:THR63 4.6 28.2 1.0 CA A:THR63 4.7 24.9 1.0 O A:THR62 4.8 22.0 1.0 NA A:NA5 4.8 26.9 0.2

Sodium binding site 2 out of 7 in the Crystal Structure of Cng Mimicking Nak Mutant, Nak-Etpp, Na+ Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Cng Mimicking Nak Mutant, Nak-Etpp, Na+ Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Na5 b:26.9 occ:0.25 O A:THR63 2.7 23.3 1.0 NA A:NA7 2.8 67.0 0.2 O A:VAL64 3.4 24.3 1.0 C A:VAL64 3.9 26.1 1.0 C A:THR63 3.9 28.2 1.0 CA A:VAL64 4.4 23.2 1.0 N A:GLY65 4.5 23.5 1.0 N A:VAL64 4.7 19.7 1.0 CA A:GLY65 4.8 26.3 1.0 NA A:NA4 4.8 32.4 0.2 CA A:THR63 5.0 24.9 1.0 CB A:THR63 5.0 27.2 1.0

Sodium binding site 3 out of 7 in the Crystal Structure of Cng Mimicking Nak Mutant, Nak-Etpp, Na+ Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Crystal Structure of Cng Mimicking Nak Mutant, Nak-Etpp, Na+ Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Na6 b:63.8 occ:0.25 NA A:NA7 2.7 67.0 0.2 O A:HOH1 3.0 57.4 1.0 O A:GLY65 3.2 29.0 1.0 C A:GLY65 4.3 27.5 1.0 CA A:GLU66 5.0 30.5 1.0

Sodium binding site 4 out of 7 in the Crystal Structure of Cng Mimicking Nak Mutant, Nak-Etpp, Na+ Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 4 of Crystal Structure of Cng Mimicking Nak Mutant, Nak-Etpp, Na+ Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Na7 b:67.0 occ:0.25 NA A:NA6 2.7 63.8 0.2 NA A:NA5 2.8 26.9 0.2 O A:VAL64 3.4 24.3 1.0 O A:GLY65 3.6 29.0 1.0 C A:GLY65 4.0 27.5 1.0 CA A:GLY65 4.1 26.3 1.0 C A:VAL64 4.3 26.1 1.0 N A:GLY65 4.6 23.5 1.0 O A:THR63 4.8 23.3 1.0 N A:GLU66 5.0 26.0 1.0

Sodium binding site 5 out of 7 in the Crystal Structure of Cng Mimicking Nak Mutant, Nak-Etpp, Na+ Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 5 of Crystal Structure of Cng Mimicking Nak Mutant, Nak-Etpp, Na+ Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Na1 b:13.8 occ:0.25 O B:THR63 2.8 32.5 1.0 O B:VAL64 3.2 32.4 1.0 C B:VAL64 3.7 30.6 1.0 C B:THR63 4.0 33.0 1.0 CA B:VAL64 4.3 30.7 1.0 N B:GLY65 4.4 30.9 1.0 N B:VAL64 4.7 28.5 1.0 CA B:GLY65 4.7 34.9 1.0 NA B:NA2 4.9 31.7 0.2

Sodium binding site 6 out of 7 in the Crystal Structure of Cng Mimicking Nak Mutant, Nak-Etpp, Na+ Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 6 of Crystal Structure of Cng Mimicking Nak Mutant, Nak-Etpp, Na+ Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Na2 b:31.7 occ:0.25 OG1 B:THR63 2.5 25.7 1.0 O B:HOH115 3.1 43.5 0.2 CB B:THR63 3.4 32.1 1.0 O B:THR63 4.0 32.5 1.0 CG2 B:THR63 4.3 27.4 1.0 C B:THR63 4.5 33.0 1.0 CA B:THR63 4.6 30.4 1.0 O B:THR62 4.8 25.2 1.0 NA B:NA1 4.9 13.8 0.2

Sodium binding site 7 out of 7 in the Crystal Structure of Cng Mimicking Nak Mutant, Nak-Etpp, Na+ Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 7 of Crystal Structure of Cng Mimicking Nak Mutant, Nak-Etpp, Na+ Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Na3 b:81.5 occ:0.25 O B:GLY65 3.4 43.3 1.0 C B:GLY65 4.5 37.8 1.0 O B:THR67 4.9 43.0 1.0 CA B:GLU66 5.0 40.8 1.0

M.G.Derebe, W.Zeng, Y.Li, A.Alam, Y.Jiang. Structural Studies of Ion Permeation and CA2+ Blockage of A Bacterial Channel Mimicking the Cyclic Nucleotide-Gated Channel Pore. Proc.Natl.Acad.Sci.Usa V. 108 592 2011.
ISSN: ISSN 0027-8424
PubMed: 21187429
DOI: 10.1073/PNAS.1013643108