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Sodium in PDB 3jzt: Structure of A Cubic Crystal Form of X (Adrp) Domain From Fcov with Adp-Ribose

Protein crystallography data

The structure of Structure of A Cubic Crystal Form of X (Adrp) Domain From Fcov with Adp-Ribose, PDB code: 3jzt was solved by J.A.Wojdyla, I.Manolaridis, P.A.Tucker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.94 / 3.91
Space group P 21 3
Cell size a, b, c (Å), α, β, γ (°) 220.236, 220.236, 220.236, 90.00, 90.00, 90.00
R / Rfree (%) 19.9 / 23.9

Other elements in 3jzt:

The structure of Structure of A Cubic Crystal Form of X (Adrp) Domain From Fcov with Adp-Ribose also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of A Cubic Crystal Form of X (Adrp) Domain From Fcov with Adp-Ribose (pdb code 3jzt). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of A Cubic Crystal Form of X (Adrp) Domain From Fcov with Adp-Ribose, PDB code: 3jzt:

Sodium binding site 1 out of 1 in 3jzt

Go back to Sodium Binding Sites List in 3jzt
Sodium binding site 1 out of 1 in the Structure of A Cubic Crystal Form of X (Adrp) Domain From Fcov with Adp-Ribose


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of A Cubic Crystal Form of X (Adrp) Domain From Fcov with Adp-Ribose within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na3

b:16.7
occ:1.00
NH2 B:ARG93 3.1 44.9 1.0
CD B:LYS92 3.4 42.4 1.0
CE B:LYS92 3.4 46.0 1.0
NH1 B:ARG93 3.5 47.0 1.0
CZ B:ARG93 3.7 45.4 1.0
NZ B:LYS89 4.5 35.0 1.0
CG B:LYS92 4.7 35.3 1.0
NZ B:LYS92 4.8 48.0 1.0
OE2 B:GLU96 4.9 31.5 1.0
CB B:LYS92 4.9 31.0 1.0

Reference:

J.A.Wojdyla, I.Manolaridis, E.J.Snijder, A.E.Gorbalenya, B.Coutard, Y.Piotrowski, R.Hilgenfeld, P.A.Tucker. Structure of the X (Adrp) Domain of NSP3 From Feline Coronavirus Acta Crystallogr.,Sect.D V. 65 1292 2009.
ISSN: ISSN 0907-4449
PubMed: 19966415
DOI: 10.1107/S0907444909040074
Page generated: Tue Dec 15 06:15:49 2020

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