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Sodium in PDB 3ju4: Crystal Structure Analysis of Endosialidasenf at 0.98 A Resolution

Enzymatic activity of Crystal Structure Analysis of Endosialidasenf at 0.98 A Resolution

All present enzymatic activity of Crystal Structure Analysis of Endosialidasenf at 0.98 A Resolution:
3.2.1.129;

Protein crystallography data

The structure of Crystal Structure Analysis of Endosialidasenf at 0.98 A Resolution, PDB code: 3ju4 was solved by E.C.Schulz, P.Neuman, R.Gerardy-Schahn, G.M.Sheldrick, R.Ficner, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 0.98
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 119.040, 119.040, 175.690, 90.00, 90.00, 120.00
R / Rfree (%) 11.6 / 13.3

Other elements in 3ju4:

The structure of Crystal Structure Analysis of Endosialidasenf at 0.98 A Resolution also contains other interesting chemical elements:

Chlorine (Cl) 5 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure Analysis of Endosialidasenf at 0.98 A Resolution (pdb code 3ju4). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure Analysis of Endosialidasenf at 0.98 A Resolution, PDB code: 3ju4:

Sodium binding site 1 out of 1 in 3ju4

Go back to Sodium Binding Sites List in 3ju4
Sodium binding site 1 out of 1 in the Crystal Structure Analysis of Endosialidasenf at 0.98 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure Analysis of Endosialidasenf at 0.98 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na7

b:2.4
occ:1.00
O A:THR322 2.4 3.9 1.0
O A:HIS743 2.5 4.5 1.0
O A:TYR324 2.5 3.9 1.0
O A:SER745 2.5 3.9 1.0
OD2 A:ASP746 2.8 5.4 1.0
CG A:ASP746 3.3 4.0 1.0
OD1 A:ASP746 3.4 3.9 1.0
C A:SER745 3.5 3.6 1.0
ND2 A:ASN326 3.6 3.8 1.0
C A:HIS743 3.6 3.8 1.0
C A:THR322 3.7 3.6 1.0
C A:TYR324 3.7 3.7 1.0
N A:SER745 4.0 3.5 1.0
C A:PRO744 4.0 3.9 1.0
C A:PRO323 4.0 3.6 1.0
O A:PRO323 4.3 3.8 1.0
CA A:PRO323 4.3 4.5 1.0
N A:TYR324 4.3 3.5 1.0
O A:PRO744 4.3 5.6 1.0
CA A:SER745 4.3 3.9 0.1
N A:ASP746 4.3 3.5 1.0
CG A:ASN326 4.3 3.2 1.0
CA A:SER745 4.4 3.9 0.9
N A:PRO744 4.4 3.8 1.0
CB A:ASP746 4.4 3.6 1.0
CA A:PRO744 4.4 4.2 1.0
N A:ASN326 4.4 3.4 1.0
N A:PRO323 4.5 3.9 1.0
N A:THR322 4.5 3.5 1.0
CA A:HIS743 4.5 4.1 1.0
CA A:ASP746 4.6 3.4 1.0
CB A:HIS743 4.6 4.1 1.0
N A:TYR325 4.7 3.8 1.0
CA A:TYR324 4.7 3.8 1.0
CA A:THR322 4.7 3.8 1.0
N A:HIS743 4.7 4.0 1.0
CB A:ASN326 4.7 3.7 1.0
CA A:TYR325 4.8 3.7 1.0
O A:HOH2285 4.9 4.8 1.0

Reference:

E.C.Schulz, P.Neumann, R.Gerardy-Schahn, G.M.Sheldrick, R.Ficner. Structure Analysis of Endosialidase Nf at 0.98 A Resolution. Acta Crystallogr.,Sect.D V. 66 176 2010.
ISSN: ISSN 0907-4449
PubMed: 20124697
DOI: 10.1107/S0907444909048720
Page generated: Tue Dec 15 06:15:45 2020

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